Wall clock time and date at job start Mon Mar 30 2020 03:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 115.55054 * 2 1 4 4 C 1.52998 * 117.50305 * 145.70716 * 2 1 3 5 5 C 1.52997 * 117.50247 * 214.33182 * 2 1 3 6 6 C 1.53005 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50142 * 145.02061 * 5 2 1 8 8 N 1.46505 * 109.46923 * 294.72516 * 7 5 2 9 9 C 1.34776 * 119.99480 * 174.62086 * 8 7 5 10 10 O 1.21433 * 120.00569 * 359.97438 * 9 8 7 11 11 C 1.48833 * 119.99680 * 180.02562 * 9 8 7 12 12 O 1.21505 * 119.99677 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00279 * 179.97438 * 11 9 8 14 14 C 1.36121 * 120.00216 * 179.97438 * 13 11 9 15 15 H 1.07991 * 119.99649 * 0.02562 * 14 13 11 16 16 C 1.39582 * 119.99684 * 179.97438 * 14 13 11 17 17 N 1.31016 * 120.00366 * 359.73149 * 16 14 13 18 18 Si 1.86800 * 119.99579 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47156 * 269.72530 * 18 16 14 20 20 H 1.48501 * 109.47446 * 29.72804 * 18 16 14 21 21 H 1.48506 * 109.47156 * 149.72819 * 18 16 14 22 22 H 1.08994 * 109.46830 * 205.66692 * 1 2 3 23 23 H 1.09002 * 109.47128 * 325.67204 * 1 2 3 24 24 H 1.09009 * 109.46933 * 85.66866 * 1 2 3 25 25 H 1.09006 * 117.49201 * 0.02562 * 4 2 1 26 26 H 1.08995 * 117.50391 * 214.98736 * 4 2 1 27 27 H 1.09001 * 109.46656 * 199.96885 * 6 5 2 28 28 H 1.08997 * 109.47045 * 319.96526 * 6 5 2 29 29 H 1.08999 * 109.46547 * 79.96938 * 6 5 2 30 30 H 1.08996 * 109.47215 * 174.72105 * 7 5 2 31 31 H 1.08995 * 109.47030 * 54.71938 * 7 5 2 32 32 H 0.96997 * 120.00202 * 354.61493 * 8 7 5 33 33 H 0.97006 * 119.99892 * 359.97438 * 13 11 9 34 34 H 0.96997 * 119.99997 * 0.26576 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 0.7646 5 6 2.2365 -1.1206 -0.7654 6 6 1.3589 -2.1553 -1.4727 7 6 3.5491 -0.7753 -1.4717 8 7 3.2872 0.1854 -2.5463 9 6 4.3136 0.7186 -3.2383 10 8 5.4553 0.4032 -2.9707 11 6 4.0477 1.6950 -4.3296 12 8 2.9053 2.0109 -4.5971 13 7 5.0739 2.2287 -5.0213 14 6 4.8307 3.1213 -6.0198 15 1 3.8154 3.4021 -6.2575 16 6 5.8937 3.6743 -6.7357 17 7 7.1258 3.3384 -6.4431 18 14 5.5599 4.8998 -8.1054 19 1 5.4038 4.1741 -9.3917 20 1 4.3137 5.6499 -7.8059 21 1 6.6968 5.8496 -8.2078 22 1 -0.3633 -0.9262 0.4451 23 1 -0.3633 0.8487 0.5795 24 1 -0.3633 0.0776 -1.0248 25 1 1.6112 -1.8591 1.2673 26 1 3.1715 -0.8755 1.2680 27 1 1.9416 -3.0566 -1.6632 28 1 0.5057 -2.4011 -0.8405 29 1 1.0043 -1.7452 -2.4183 30 1 3.9846 -1.6816 -1.8925 31 1 4.2434 -0.3377 -0.7544 32 1 2.3753 0.4375 -2.7599 33 1 5.9860 1.9767 -4.8075 34 1 7.2991 2.7024 -5.7316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:30 Heat of formation + Delta-G solvation = -85.114484 kcal Electronic energy + Delta-G solvation = -16940.117743 eV Core-core repulsion = 14065.372549 eV Total energy + Delta-G solvation = -2874.745194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.50588 -39.97476 -39.03388 -36.81173 -35.32891 -33.29375 -30.79753 -28.89255 -28.24392 -26.91698 -24.33953 -22.28397 -21.38993 -20.37750 -20.04436 -19.06231 -17.70814 -16.95722 -16.86571 -16.60348 -15.75559 -15.61891 -15.49274 -14.75798 -14.71013 -14.33122 -13.87577 -13.57682 -13.50595 -13.03235 -12.92976 -12.88371 -12.54806 -12.39089 -12.05389 -12.01147 -11.88785 -11.68290 -10.94257 -10.63812 -10.37505 -10.29464 -10.26761 -9.16621 -6.24700 0.48095 1.52738 1.62640 1.66294 1.85678 2.30352 2.39526 2.73545 3.07899 3.15547 3.52046 3.69988 3.79294 3.91361 3.94591 4.41285 4.47921 4.59854 4.83199 4.87077 4.89757 4.95663 4.98540 5.09068 5.19201 5.22866 5.32073 5.36996 5.44950 5.69836 6.02169 6.29921 6.44009 6.87080 7.14990 7.58033 8.27404 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047010 B = 0.004694 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.468793 B = 5963.637974 C = 6279.660787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.152 4.152 3 H 0.089 0.911 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.112 4.112 7 C 0.154 3.846 8 N -0.686 5.686 9 C 0.517 3.483 10 O -0.569 6.569 11 C 0.395 3.605 12 O -0.610 6.610 13 N -0.526 5.526 14 C -0.416 4.416 15 H 0.094 0.906 16 C -0.031 4.031 17 N -0.886 5.886 18 Si 1.145 2.855 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.270 1.270 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.388 0.612 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 -8.473 11.664 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 H 0.107 0.893 4 C -0.178 4.178 5 C -0.152 4.152 6 C -0.169 4.169 7 C 0.031 3.969 8 N -0.338 5.338 9 C 0.300 3.700 10 O -0.449 6.449 11 C 0.180 3.820 12 O -0.498 6.498 13 N -0.162 5.162 14 C -0.546 4.546 15 H 0.112 0.888 16 C -0.233 4.233 17 N -0.522 5.522 18 Si 0.962 3.038 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.195 1.195 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.252 0.748 33 H 0.223 0.777 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.705 -7.582 10.583 16.238 hybrid contribution -0.260 -1.005 1.216 1.599 sum -9.965 -8.588 11.800 17.671 Atomic orbital electron populations 1.21361 0.91360 1.02785 1.02088 1.22487 0.96491 0.93975 1.04050 0.89313 1.23308 1.02837 1.00813 0.90883 1.21725 0.96597 1.02053 0.94818 1.21322 0.98819 0.96764 0.99976 1.21047 0.96326 0.91538 0.87972 1.45634 1.09587 1.43824 1.34733 1.20021 0.85330 0.81739 0.82917 1.90671 1.22414 1.62825 1.68941 1.19596 0.85776 0.88597 0.87995 1.90555 1.21420 1.66346 1.71519 1.41689 1.08453 1.36570 1.29464 1.20868 0.98064 1.22439 1.13184 0.88773 1.28446 0.90516 1.01182 1.03192 1.70766 1.21002 1.30921 1.29486 0.82534 0.76502 0.73116 0.71670 1.18913 1.19252 1.19481 0.90927 0.91728 0.92468 0.86254 0.88436 0.91652 0.90219 0.92931 0.90977 0.91610 0.74815 0.77676 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.06 71.98 0.65 -1.19 16 2 C -0.15 -2.87 6.09 -10.80 -0.07 -2.93 16 3 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 4 C -0.14 -2.21 9.51 30.59 0.29 -1.92 16 5 C -0.15 -2.98 2.11 -52.18 -0.11 -3.09 16 6 C -0.11 -1.90 9.12 71.98 0.66 -1.24 16 7 C 0.15 4.12 5.58 86.38 0.48 4.61 16 8 N -0.69 -23.40 5.51 -465.01 -2.56 -25.96 16 9 C 0.52 22.76 7.87 87.08 0.69 23.45 16 10 O -0.57 -26.81 16.46 -3.50 -0.06 -26.87 16 11 C 0.40 20.48 7.82 87.08 0.68 21.16 16 12 O -0.61 -33.57 16.03 -3.73 -0.06 -33.63 16 13 N -0.53 -28.93 5.24 -308.88 -1.62 -30.55 16 14 C -0.42 -23.74 9.67 84.35 0.82 -22.93 16 15 H 0.09 5.56 7.15 -2.92 -0.02 5.54 16 16 C -0.03 -1.67 5.51 85.14 0.47 -1.20 16 17 N -0.89 -49.72 13.66 21.76 0.30 -49.42 16 18 Si 1.15 46.28 29.93 68.60 2.05 48.33 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H 0.07 0.88 7.28 -2.39 -0.02 0.86 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.12 1.38 8.05 -2.38 -0.02 1.37 16 26 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.04 6.96 -2.39 -0.02 1.03 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.07 1.84 7.93 -2.39 -0.02 1.82 16 32 H 0.42 13.64 7.94 -92.71 -0.74 12.91 16 33 H 0.39 21.00 6.18 -92.70 -0.57 20.43 16 34 H 0.26 14.79 6.78 -92.71 -0.63 14.16 16 Total: -1.00 -67.22 295.67 2.56 -64.66 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.05 Total: 38.74 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 4.56 Total: 14.71 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -3.88 Total: -105.93 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.12 Total: -60.50 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.05 Total: 48.33 kcal Total: -67.22 2.56 -64.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.459 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds