Wall clock time and date at job start Mon Mar 30 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 115.56403 * 2 1 4 4 C 1.53002 * 117.49960 * 145.69985 * 2 1 3 5 5 C 1.52997 * 60.00187 * 107.48564 * 4 2 1 6 6 C 1.53004 * 117.49851 * 107.51469 * 5 4 2 7 7 C 1.52995 * 117.49884 * 252.51159 * 5 4 2 8 8 N 1.46504 * 109.47153 * 294.70756 * 7 5 4 9 9 C 1.34773 * 120.00509 * 177.54717 * 8 7 5 10 10 O 1.21445 * 119.99698 * 0.02562 * 9 8 7 11 11 C 1.48829 * 120.00611 * 179.97438 * 9 8 7 12 12 O 1.21507 * 119.99647 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00350 * 179.97438 * 11 9 8 14 14 C 1.36120 * 120.00092 * 179.97438 * 13 11 9 15 15 H 1.08002 * 120.00014 * 0.02562 * 14 13 11 16 16 C 1.39580 * 120.00010 * 180.02562 * 14 13 11 17 17 N 1.31013 * 120.00404 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47617 * 90.00244 * 18 16 14 20 20 H 1.48509 * 109.46950 * 210.00188 * 18 16 14 21 21 H 1.48495 * 109.47238 * 329.99853 * 18 16 14 22 22 H 1.09000 * 109.46907 * 205.68274 * 1 2 3 23 23 H 1.08996 * 109.46681 * 325.68364 * 1 2 3 24 24 H 1.09000 * 109.46820 * 85.68195 * 1 2 3 25 25 H 1.08995 * 117.49376 * 359.97438 * 4 2 1 26 26 H 1.09004 * 117.51571 * 214.96973 * 4 2 1 27 27 H 1.09003 * 109.46973 * 210.73927 * 6 5 4 28 28 H 1.09003 * 109.46625 * 330.73863 * 6 5 4 29 29 H 1.08995 * 109.47106 * 90.74233 * 6 5 4 30 30 H 1.08998 * 109.47647 * 54.70582 * 7 5 4 31 31 H 1.08998 * 109.47541 * 174.71236 * 7 5 4 32 32 H 0.97002 * 119.99738 * 357.54253 * 8 7 5 33 33 H 0.96997 * 120.00205 * 0.02562 * 13 11 9 34 34 H 0.96993 * 120.00566 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 0.7648 5 6 2.2364 -1.1209 -0.7652 6 6 3.5492 -0.7764 -1.4716 7 6 1.3588 -2.1560 -1.4717 8 7 1.8633 -3.5012 -1.1853 9 6 1.2145 -4.5807 -1.6650 10 8 0.2118 -4.4382 -2.3351 11 6 1.7274 -5.9473 -1.3745 12 8 2.7309 -6.0898 -0.7044 13 7 1.0782 -7.0267 -1.8538 14 6 1.5476 -8.2766 -1.5885 15 1 2.4401 -8.4033 -0.9936 16 6 0.8756 -9.3945 -2.0854 17 7 -0.2067 -9.2410 -2.8075 18 14 1.5194 -11.1098 -1.7207 19 1 0.9089 -11.6108 -0.4632 20 1 1.1652 -12.0197 -2.8397 21 1 2.9959 -11.0625 -1.5696 22 1 -0.3633 -0.9262 0.4454 23 1 -0.3632 0.8488 0.5794 24 1 -0.3633 0.0774 -1.0248 25 1 1.6112 -1.8584 1.2682 26 1 3.1717 -0.8757 1.2681 27 1 3.3330 -0.2899 -2.4228 28 1 4.1338 -0.1037 -0.8440 29 1 4.1157 -1.6900 -1.6513 30 1 0.3333 -2.0686 -1.1128 31 1 1.3836 -1.9801 -2.5471 32 1 2.6645 -3.6150 -0.6503 33 1 0.2769 -6.9130 -2.3884 34 1 -0.6739 -10.0178 -3.1525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704021871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:37 Heat of formation + Delta-G solvation = -62.597223 kcal Electronic energy + Delta-G solvation = -16919.253462 eV Core-core repulsion = 14045.484690 eV Total energy + Delta-G solvation = -2873.768772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73772 -38.63990 -37.03547 -34.47600 -33.52380 -31.37744 -30.21341 -27.50630 -26.91072 -25.45707 -22.51517 -21.15380 -19.60675 -18.85017 -18.22437 -16.78277 -15.91258 -15.60366 -15.02874 -14.78256 -14.45583 -14.09854 -13.79461 -13.33603 -13.18706 -12.86245 -12.68400 -12.40531 -12.24409 -12.02394 -11.75821 -11.52812 -11.19018 -11.06259 -10.53943 -10.42908 -10.35149 -10.00874 -9.74697 -9.70624 -8.67818 -8.24445 -8.21003 -6.65598 -3.98040 2.47883 3.15302 3.16027 3.20464 3.28360 3.79214 4.09844 4.30407 4.47644 4.58885 4.74565 4.88614 5.10337 5.17469 5.20411 5.43882 5.62512 5.66142 5.72151 5.74372 5.80412 5.84606 5.91765 6.01524 6.09653 6.15490 6.21321 6.82445 7.32343 7.72146 7.92133 8.35141 8.65649 8.97918 9.33679 9.86894 10.49380 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049561 B = 0.004628 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.822456 B = 6048.180831 C = 6273.411640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 H 0.105 0.895 4 C -0.166 4.166 5 C -0.143 4.143 6 C -0.114 4.114 7 C 0.154 3.846 8 N -0.710 5.710 9 C 0.512 3.488 10 O -0.549 6.549 11 C 0.395 3.605 12 O -0.598 6.598 13 N -0.500 5.500 14 C -0.306 4.306 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.869 5.869 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.265 1.265 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 14.777 3.567 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 H 0.123 0.877 4 C -0.203 4.203 5 C -0.143 4.143 6 C -0.171 4.171 7 C 0.030 3.970 8 N -0.364 5.364 9 C 0.296 3.704 10 O -0.426 6.426 11 C 0.179 3.821 12 O -0.486 6.486 13 N -0.134 5.134 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.508 5.508 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.489 14.658 3.398 15.251 hybrid contribution 0.141 -0.756 0.050 0.771 sum 2.630 13.902 3.448 14.563 Atomic orbital electron populations 1.21422 0.92788 1.02105 1.02141 1.22429 0.95362 0.94089 1.03792 0.87680 1.23227 1.02696 1.01294 0.93112 1.21782 0.98577 0.99951 0.94001 1.21322 0.94229 1.01670 0.99911 1.20806 0.96685 0.80001 0.99459 1.45649 1.31076 1.04614 1.55103 1.20687 0.83439 0.86905 0.79350 1.90686 1.25484 1.87435 1.38987 1.18975 0.88592 0.84667 0.89862 1.90578 1.27483 1.85791 1.44794 1.41563 1.24721 1.04782 1.42346 1.19880 1.11284 0.81072 1.31440 0.86997 1.25580 0.95393 1.01040 0.95567 1.69481 1.16664 1.32817 1.31799 0.85723 0.79616 0.80031 0.78192 1.19909 1.20526 1.18907 0.92140 0.92147 0.91870 0.88355 0.88579 0.92071 0.92424 0.91695 0.90985 0.91354 0.75425 0.76002 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.71 37.16 0.32 -0.87 16 2 C -0.14 -1.31 6.13 -90.61 -0.56 -1.87 16 3 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.17 -1.73 9.54 -26.73 -0.26 -1.99 16 5 C -0.14 -1.58 2.11 -154.51 -0.33 -1.91 16 6 C -0.11 -1.13 9.72 37.16 0.36 -0.77 16 7 C 0.15 2.20 5.38 -4.04 -0.02 2.18 16 8 N -0.71 -12.46 5.51 -60.93 -0.34 -12.80 16 9 C 0.51 11.34 7.87 -11.88 -0.09 11.25 16 10 O -0.55 -13.10 16.47 5.41 0.09 -13.01 16 11 C 0.39 10.09 7.82 -11.88 -0.09 10.00 16 12 O -0.60 -16.20 16.03 5.36 0.09 -16.12 16 13 N -0.50 -13.55 5.25 -11.59 -0.06 -13.61 16 14 C -0.31 -8.51 9.67 -15.15 -0.15 -8.66 16 15 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 17 N -0.87 -23.47 13.03 55.53 0.72 -22.74 16 18 Si 0.94 20.18 29.56 -169.99 -5.02 15.15 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 22 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.06 6.07 -51.93 -0.32 0.74 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.41 6.91 7.93 -40.82 -0.32 6.58 16 33 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 34 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -30.39 296.82 -5.57 -35.97 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -4.62 Total: 14.60 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.90 Total: 8.08 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.33 Total: -49.15 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: 0.18 Total: -29.13 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.39 -5.57 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.629 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds