Wall clock time and date at job start Mon Mar 30 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 115.56403 * 2 1 4 4 C 1.53002 * 117.49960 * 145.69985 * 2 1 3 5 5 C 1.52997 * 60.00187 * 107.48564 * 4 2 1 6 6 C 1.53004 * 117.49851 * 107.51469 * 5 4 2 7 7 C 1.52995 * 117.49884 * 252.51159 * 5 4 2 8 8 N 1.46504 * 109.47153 * 294.70756 * 7 5 4 9 9 C 1.34773 * 120.00509 * 177.54717 * 8 7 5 10 10 O 1.21445 * 119.99698 * 0.02562 * 9 8 7 11 11 C 1.48829 * 120.00611 * 179.97438 * 9 8 7 12 12 O 1.21507 * 119.99647 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00350 * 179.97438 * 11 9 8 14 14 C 1.36120 * 120.00092 * 179.97438 * 13 11 9 15 15 H 1.08002 * 120.00014 * 0.02562 * 14 13 11 16 16 C 1.39580 * 120.00010 * 180.02562 * 14 13 11 17 17 N 1.31013 * 120.00404 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47617 * 90.00244 * 18 16 14 20 20 H 1.48509 * 109.46950 * 210.00188 * 18 16 14 21 21 H 1.48495 * 109.47238 * 329.99853 * 18 16 14 22 22 H 1.09000 * 109.46907 * 205.68274 * 1 2 3 23 23 H 1.08996 * 109.46681 * 325.68364 * 1 2 3 24 24 H 1.09000 * 109.46820 * 85.68195 * 1 2 3 25 25 H 1.08995 * 117.49376 * 359.97438 * 4 2 1 26 26 H 1.09004 * 117.51571 * 214.96973 * 4 2 1 27 27 H 1.09003 * 109.46973 * 210.73927 * 6 5 4 28 28 H 1.09003 * 109.46625 * 330.73863 * 6 5 4 29 29 H 1.08995 * 109.47106 * 90.74233 * 6 5 4 30 30 H 1.08998 * 109.47647 * 54.70582 * 7 5 4 31 31 H 1.08998 * 109.47541 * 174.71236 * 7 5 4 32 32 H 0.97002 * 119.99738 * 357.54253 * 8 7 5 33 33 H 0.96997 * 120.00205 * 0.02562 * 13 11 9 34 34 H 0.96993 * 120.00566 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1211 0.7648 5 6 2.2364 -1.1209 -0.7652 6 6 3.5492 -0.7764 -1.4716 7 6 1.3588 -2.1560 -1.4717 8 7 1.8633 -3.5012 -1.1853 9 6 1.2145 -4.5807 -1.6650 10 8 0.2118 -4.4382 -2.3351 11 6 1.7274 -5.9473 -1.3745 12 8 2.7309 -6.0898 -0.7044 13 7 1.0782 -7.0267 -1.8538 14 6 1.5476 -8.2766 -1.5885 15 1 2.4401 -8.4033 -0.9936 16 6 0.8756 -9.3945 -2.0854 17 7 -0.2067 -9.2410 -2.8075 18 14 1.5194 -11.1098 -1.7207 19 1 0.9089 -11.6108 -0.4632 20 1 1.1652 -12.0197 -2.8397 21 1 2.9959 -11.0625 -1.5696 22 1 -0.3633 -0.9262 0.4454 23 1 -0.3632 0.8488 0.5794 24 1 -0.3633 0.0774 -1.0248 25 1 1.6112 -1.8584 1.2682 26 1 3.1717 -0.8757 1.2681 27 1 3.3330 -0.2899 -2.4228 28 1 4.1338 -0.1037 -0.8440 29 1 4.1157 -1.6900 -1.6513 30 1 0.3333 -2.0686 -1.1128 31 1 1.3836 -1.9801 -2.5471 32 1 2.6645 -3.6150 -0.6503 33 1 0.2769 -6.9130 -2.3884 34 1 -0.6739 -10.0178 -3.1525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:37 Heat of formation + Delta-G solvation = -84.192599 kcal Electronic energy + Delta-G solvation = -16920.189907 eV Core-core repulsion = 14045.484690 eV Total energy + Delta-G solvation = -2874.705218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38034 -39.90127 -38.87978 -36.44304 -35.14883 -33.44268 -31.04866 -28.81823 -27.94069 -27.25726 -24.29455 -22.01413 -21.23071 -20.50943 -19.90912 -18.46057 -17.67193 -16.88291 -16.77776 -16.26059 -15.93318 -15.76495 -15.24682 -14.76830 -14.60088 -14.03379 -13.98829 -13.67285 -13.45681 -13.09303 -13.00339 -12.96610 -12.58678 -12.33913 -12.31883 -12.10217 -11.99467 -11.67094 -10.85527 -10.65342 -10.28758 -10.19555 -10.18540 -8.66438 -6.11655 0.59140 1.41099 1.47310 1.55871 1.78108 2.28303 2.36611 2.78843 3.14813 3.32943 3.59319 3.71106 3.91864 3.97445 4.02923 4.43963 4.53642 4.62970 4.82456 4.89967 4.94361 4.95347 5.00975 5.09053 5.20328 5.24597 5.31156 5.34768 5.44187 5.67379 6.16072 6.38653 6.80590 7.00931 7.27085 7.79017 8.49487 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049561 B = 0.004628 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.822456 B = 6048.180831 C = 6273.411640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 H 0.129 0.871 4 C -0.169 4.169 5 C -0.153 4.153 6 C -0.111 4.111 7 C 0.151 3.849 8 N -0.688 5.688 9 C 0.517 3.483 10 O -0.569 6.569 11 C 0.389 3.611 12 O -0.617 6.617 13 N -0.511 5.511 14 C -0.346 4.346 15 H 0.099 0.901 16 C -0.004 4.004 17 N -0.896 5.896 18 Si 1.011 2.989 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.415 0.585 33 H 0.401 0.599 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 15.661 4.031 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 H 0.147 0.853 4 C -0.207 4.207 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.028 3.972 8 N -0.340 5.340 9 C 0.299 3.701 10 O -0.448 6.448 11 C 0.174 3.826 12 O -0.507 6.507 13 N -0.144 5.144 14 C -0.476 4.476 15 H 0.117 0.883 16 C -0.208 4.208 17 N -0.534 5.534 18 Si 0.832 3.168 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.188 1.188 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.060 15.584 3.871 16.346 hybrid contribution -0.053 -0.921 -0.079 0.926 sum 3.007 14.663 3.792 15.441 Atomic orbital electron populations 1.21464 0.92880 1.02149 1.02321 1.22547 0.95310 0.94464 1.01474 0.85339 1.23279 1.03441 1.01577 0.92359 1.21725 0.99104 1.00173 0.94332 1.21319 0.93461 1.01536 1.00533 1.21029 0.97369 0.78783 0.99991 1.45634 1.30234 1.04936 1.53237 1.20096 0.83536 0.86586 0.79835 1.90676 1.26385 1.87509 1.40268 1.19609 0.88125 0.85888 0.88965 1.90543 1.28208 1.86526 1.45397 1.41660 1.24780 1.05285 1.42724 1.19994 1.12053 0.82148 1.33406 0.88304 1.26552 0.95140 1.04698 0.94458 1.69548 1.17392 1.34512 1.31925 0.84683 0.78922 0.74633 0.78599 1.18919 1.19083 1.18760 0.93670 0.90289 0.91936 0.89841 0.86950 0.91486 0.90419 0.93022 0.91244 0.91407 0.74852 0.76490 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.71 71.98 0.63 -1.58 16 2 C -0.12 -1.95 6.13 -10.79 -0.07 -2.01 16 3 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.17 -3.19 9.54 30.59 0.29 -2.90 16 5 C -0.15 -3.11 2.11 -52.18 -0.11 -3.22 16 6 C -0.11 -1.95 9.72 71.98 0.70 -1.25 16 7 C 0.15 4.19 5.38 86.38 0.46 4.66 16 8 N -0.69 -24.02 5.51 -465.01 -2.56 -26.58 16 9 C 0.52 23.20 7.87 87.08 0.69 23.89 16 10 O -0.57 -27.55 16.47 -3.54 -0.06 -27.61 16 11 C 0.39 20.38 7.82 87.08 0.68 21.06 16 12 O -0.62 -34.08 16.03 -3.74 -0.06 -34.14 16 13 N -0.51 -28.52 5.25 -308.88 -1.62 -30.14 16 14 C -0.35 -19.70 9.67 84.35 0.82 -18.88 16 15 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 16 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 17 N -0.90 -48.54 13.03 21.76 0.28 -48.26 16 18 Si 1.01 40.93 29.56 68.60 2.03 42.96 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 22 H 0.04 0.89 7.33 -2.39 -0.02 0.88 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.06 8.09 -2.39 -0.02 1.05 16 25 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 26 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 2.01 6.07 -2.39 -0.01 1.99 16 31 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 32 H 0.41 13.83 7.93 -92.71 -0.74 13.10 16 33 H 0.40 22.61 7.35 -92.71 -0.68 21.93 16 34 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -65.48 296.82 2.28 -63.21 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.29 Total: 40.55 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 4.56 Total: 20.01 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -3.90 Total: -104.98 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -0.12 Total: -61.75 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -65.48 2.28 -63.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.987 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds