Wall clock time and date at job start Mon Mar 30 2020 03:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.42027 * 2 1 4 4 C 1.54700 * 110.38969 * 237.85165 * 2 1 3 5 5 C 1.55157 * 101.67665 * 204.36651 * 4 2 1 6 6 C 1.54322 * 102.94297 * 35.33497 * 5 4 2 7 7 H 1.09002 * 110.00895 * 97.29589 * 6 5 4 8 8 C 1.53003 * 109.88453 * 218.38674 * 6 5 4 9 9 N 1.47014 * 107.27326 * 337.80843 * 6 5 4 10 10 C 1.34783 * 125.64925 * 178.90173 * 9 6 5 11 11 O 1.21441 * 119.99719 * 174.35803 * 10 9 6 12 12 C 1.48821 * 119.99961 * 354.08368 * 10 9 6 13 13 O 1.21510 * 120.00203 * 354.55696 * 12 10 9 14 14 N 1.34773 * 120.00351 * 174.55196 * 12 10 9 15 15 C 1.36115 * 120.00495 * 179.97438 * 14 12 10 16 16 H 1.08001 * 119.99943 * 0.02562 * 15 14 12 17 17 C 1.39587 * 120.00382 * 180.02562 * 15 14 12 18 18 N 1.31017 * 120.00517 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99789 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47126 * 89.99863 * 19 17 15 21 21 H 1.48498 * 109.47065 * 210.00150 * 19 17 15 22 22 H 1.48506 * 109.47031 * 329.99981 * 19 17 15 23 23 H 1.09005 * 109.46698 * 305.81095 * 1 2 3 24 24 H 1.08997 * 109.46903 * 65.80410 * 1 2 3 25 25 H 1.09001 * 109.47420 * 185.81135 * 1 2 3 26 26 H 1.09004 * 111.09987 * 86.19870 * 4 2 1 27 27 H 1.08999 * 110.84874 * 322.42510 * 4 2 1 28 28 H 1.08998 * 110.72084 * 276.97150 * 5 4 2 29 29 H 1.09000 * 110.87173 * 153.77703 * 5 4 2 30 30 H 1.08997 * 109.47155 * 170.42127 * 8 6 5 31 31 H 1.09006 * 109.47020 * 290.42426 * 8 6 5 32 32 H 1.09002 * 109.46959 * 50.42251 * 8 6 5 33 33 H 0.97004 * 119.99556 * 0.02562 * 14 12 10 34 34 H 0.97000 * 120.00320 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0689 -0.7716 -1.2277 5 6 3.4757 -1.2024 -0.7351 6 6 3.2462 -1.4813 0.7653 7 1 3.0945 -2.5485 0.9273 8 6 4.4514 -0.9984 1.5747 9 7 2.0431 -0.7385 1.1682 10 6 1.4964 -0.7375 2.4002 11 8 0.5594 -0.0059 2.6481 12 6 2.0372 -1.6374 3.4550 13 8 2.9046 -2.4429 3.1804 14 7 1.5650 -1.5591 4.7148 15 6 2.0592 -2.3825 5.6795 16 1 2.8301 -3.0984 5.4353 17 6 1.5698 -2.3016 6.9842 18 7 2.0458 -3.0938 7.9128 19 14 0.2359 -1.0639 7.4063 20 1 -1.0976 -1.6867 7.2093 21 1 0.3814 -0.6431 8.8230 22 1 0.3636 0.1224 6.5220 23 1 -0.3633 0.6013 0.8334 24 1 -0.3633 0.4212 -0.9374 25 1 -0.3634 -1.0224 0.1041 26 1 2.1425 -0.1207 -2.0990 27 1 1.4474 -1.6407 -1.4432 28 1 4.1959 -0.3957 -0.8716 29 1 3.8077 -2.1046 -1.2488 30 1 4.2154 -1.0405 2.6380 31 1 5.3087 -1.6388 1.3671 32 1 4.6887 0.0283 1.2956 33 1 0.8723 -0.9163 4.9340 34 1 1.7054 -3.0379 8.8194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706427971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:27 Heat of formation + Delta-G solvation = -85.750820 kcal Electronic energy + Delta-G solvation = -17936.212900 eV Core-core repulsion = 15061.440113 eV Total energy + Delta-G solvation = -2874.772787 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80455 -39.76028 -38.55333 -36.31090 -34.00420 -33.56526 -32.54214 -29.32694 -27.96545 -25.24749 -24.89915 -22.52363 -21.86405 -21.12494 -19.56527 -18.22428 -17.70365 -17.38416 -16.85198 -16.26787 -15.75826 -15.12435 -14.93647 -14.72490 -14.47832 -14.21085 -14.08758 -13.93013 -13.67253 -13.08686 -12.98301 -12.70112 -12.56510 -12.45778 -12.22212 -11.99193 -11.84061 -11.57974 -11.52899 -11.43785 -10.42253 -10.16082 -9.72045 -8.62208 -6.15022 0.54572 1.26353 1.30455 1.36004 1.63990 2.08815 2.28439 2.88176 3.06672 3.60929 3.63111 3.86679 3.99058 4.16724 4.33202 4.41044 4.54043 4.66379 4.77611 4.81527 4.96105 4.98132 5.14466 5.21883 5.25410 5.29043 5.31014 5.43996 5.58005 5.75973 6.20054 6.34169 6.57930 6.88342 7.16873 7.64677 8.52545 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.007227 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.450348 B = 3873.249729 C = 4457.133132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.120 3.880 3 H 0.086 0.914 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.127 3.873 7 H 0.064 0.936 8 C -0.155 4.155 9 N -0.587 5.587 10 C 0.529 3.471 11 O -0.561 6.561 12 C 0.409 3.591 13 O -0.580 6.580 14 N -0.539 5.539 15 C -0.335 4.335 16 H 0.079 0.921 17 C 0.011 3.989 18 N -0.895 5.895 19 Si 0.946 3.054 20 H -0.254 1.254 21 H -0.256 1.256 22 H -0.251 1.251 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.390 0.610 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 7.714 -17.373 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.104 0.896 4 C -0.154 4.154 5 C -0.156 4.156 6 C 0.025 3.975 7 H 0.083 0.917 8 C -0.213 4.213 9 N -0.321 5.321 10 C 0.314 3.686 11 O -0.441 6.441 12 C 0.193 3.807 13 O -0.466 6.466 14 N -0.178 5.178 15 C -0.465 4.465 16 H 0.097 0.903 17 C -0.194 4.194 18 N -0.532 5.532 19 Si 0.766 3.234 20 H -0.178 1.178 21 H -0.180 1.180 22 H -0.175 1.175 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.832 7.484 -17.142 18.723 hybrid contribution -0.614 0.199 1.183 1.347 sum -1.446 7.683 -15.959 17.771 Atomic orbital electron populations 1.22040 0.94092 1.01817 1.03440 1.22292 0.95241 0.96347 0.84264 0.89571 1.22843 0.95554 1.00819 0.96195 1.22781 0.98055 1.03957 0.90779 1.21854 0.83643 0.95877 0.96149 0.91736 1.22191 0.97707 1.01012 1.00373 1.48535 1.28214 1.47219 1.08100 1.19675 0.82954 0.82709 0.83276 1.90631 1.29857 1.42387 1.81221 1.19621 0.87917 0.89160 0.83976 1.90587 1.33907 1.41145 1.80972 1.41706 1.35045 1.33246 1.07792 1.19135 1.21775 1.16544 0.89000 0.90329 1.26019 0.99910 0.99079 0.94372 1.69544 1.42387 1.37768 1.03547 0.85628 0.78955 0.79039 0.79814 1.17782 1.17975 1.17538 0.92849 0.88519 0.94019 0.86209 0.90417 0.88699 0.88082 0.94496 0.90700 0.91918 0.77431 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 8.54 71.98 0.61 -3.28 16 2 C 0.12 2.92 3.73 45.39 0.17 3.09 16 3 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.12 -1.88 6.50 31.91 0.21 -1.68 16 5 C -0.12 -2.12 6.48 31.78 0.21 -1.91 16 6 C 0.13 3.83 2.81 45.34 0.13 3.96 16 7 H 0.06 2.29 7.15 -2.39 -0.02 2.27 16 8 C -0.16 -4.94 8.73 71.98 0.63 -4.31 16 9 N -0.59 -19.89 2.98 -767.24 -2.29 -22.18 16 10 C 0.53 22.72 7.37 87.08 0.64 23.37 16 11 O -0.56 -24.96 14.46 -3.53 -0.05 -25.01 16 12 C 0.41 20.55 6.99 87.08 0.61 21.16 16 13 O -0.58 -31.01 11.78 -3.75 -0.04 -31.06 16 14 N -0.54 -28.35 5.05 -308.88 -1.56 -29.91 16 15 C -0.34 -19.72 10.16 84.35 0.86 -18.86 16 16 H 0.08 5.26 7.37 -2.91 -0.02 5.24 16 17 C 0.01 0.59 5.51 85.14 0.47 1.06 16 18 N -0.89 -51.71 13.94 21.77 0.30 -51.41 16 19 Si 0.95 40.56 27.74 68.60 1.90 42.46 16 20 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.25 -10.31 6.53 99.48 0.65 -9.66 16 23 H 0.05 1.64 6.36 -2.38 -0.02 1.62 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 28 H 0.09 1.39 7.73 -2.39 -0.02 1.37 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.53 5.23 -2.39 -0.01 1.51 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.06 1.69 7.96 -2.39 -0.02 1.67 16 33 H 0.39 19.05 5.23 -92.71 -0.49 18.56 16 34 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 Total: -1.00 -69.63 275.74 3.36 -66.27 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.57 Total: 28.23 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 4.53 Total: 22.60 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.55 Total: -103.50 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.10 Total: -56.06 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.90 Total: 42.46 kcal Total: -69.63 3.36 -66.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706427971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.479 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds