Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46897 * 111.00229 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47176 * 179.97438 * 9 8 7 11 11 O 1.42891 * 109.46923 * 64.99889 * 10 9 8 12 12 C 1.42905 * 114.00008 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47136 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00237 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99645 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99732 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00106 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47074 * 89.99918 * 17 15 13 19 19 H 1.48500 * 109.46911 * 210.00299 * 17 15 13 20 20 H 1.48498 * 109.47056 * 329.99693 * 17 15 13 21 21 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 22 22 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 23 23 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 24 24 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 26 26 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 27 27 H 1.00904 * 110.99886 * 56.03880 * 8 7 6 28 28 H 1.09000 * 109.46872 * 299.99816 * 9 8 7 29 29 H 1.09005 * 109.46930 * 59.99660 * 9 8 7 30 30 H 1.08996 * 109.46988 * 185.00022 * 10 9 8 31 31 H 1.09000 * 109.46955 * 305.00146 * 10 9 8 32 32 H 1.08996 * 109.47030 * 300.00097 * 12 11 10 33 33 H 1.08999 * 109.46881 * 60.00336 * 12 11 10 34 34 H 0.96998 * 119.99749 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 1.4733 -4.4639 1.4136 10 6 1.3536 -4.9248 2.8676 11 8 0.2800 -4.2267 3.5016 12 6 0.0814 -4.5857 4.8705 13 6 -1.0694 -3.7936 5.4356 14 1 -1.5966 -3.0870 4.8118 15 6 -1.4492 -3.9710 6.7492 16 7 -2.4538 -3.2801 7.2422 17 14 -0.5368 -5.1926 7.8284 18 1 0.5920 -4.5067 8.5072 19 1 -1.4661 -5.7434 8.8473 20 1 -0.0110 -6.2987 6.9887 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 2.0576 2.1094 0.0004 25 1 1.0275 -2.6837 -0.5163 26 1 2.7453 -3.1500 -0.5220 27 1 1.2029 -2.4813 1.8992 28 1 0.5147 -4.5928 0.9111 29 1 2.2327 -5.0585 0.9056 30 1 1.1560 -5.9963 2.8940 31 1 2.2848 -4.7139 3.3934 32 1 -0.1428 -5.6502 4.9381 33 1 0.9861 -4.3681 5.4381 34 1 -2.7207 -3.4046 8.1664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708443593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = 9.634122 kcal Electronic energy + Delta-G solvation = -16630.344017 eV Core-core repulsion = 13759.707431 eV Total energy + Delta-G solvation = -2870.636586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.95750 -37.55848 -36.21661 -34.34192 -32.68030 -32.22404 -29.62355 -28.20228 -27.57845 -25.26728 -21.95025 -21.67417 -21.49590 -21.18395 -17.59737 -17.53065 -16.87074 -16.15594 -15.54566 -15.29257 -14.62060 -14.33103 -14.10173 -13.91139 -13.35173 -13.26279 -12.81926 -12.45787 -12.31182 -12.24194 -11.93854 -11.57301 -11.07845 -10.99938 -10.76749 -10.60691 -10.00955 -9.88289 -9.40890 -9.21516 -8.87797 -8.49557 -8.36709 -6.14026 -4.13106 1.46369 2.12879 3.22537 3.24250 3.31092 3.32592 4.04696 4.31684 4.34097 4.59876 4.64983 4.80415 4.99644 5.17909 5.25528 5.34156 5.48187 5.51537 5.57498 5.64265 5.71480 5.73631 5.88294 6.01694 6.10706 6.16704 6.59752 6.97483 7.02590 7.48103 7.57875 7.97892 8.25549 8.63355 8.95925 9.45455 10.98940 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.004630 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.245594 B = 6045.943048 C = 6483.052137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 C -0.070 4.070 4 O 0.099 5.901 5 N -0.350 5.350 6 C 0.023 3.977 7 C 0.137 3.863 8 N -0.682 5.682 9 C 0.067 3.933 10 C 0.058 3.942 11 O -0.385 6.385 12 C 0.171 3.829 13 C -0.519 4.519 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.215 0.785 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.359 0.641 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.002 0.998 33 H -0.001 1.001 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 4.558 -15.784 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.197 4.197 3 C -0.151 4.151 4 O 0.032 5.968 5 N -0.053 5.053 6 C -0.136 4.136 7 C 0.007 3.993 8 N -0.316 5.316 9 C -0.062 4.062 10 C -0.020 4.020 11 O -0.304 6.304 12 C 0.096 3.904 13 C -0.557 4.557 14 H 0.099 0.901 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.231 0.769 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.179 0.821 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.521 4.023 -15.640 18.747 hybrid contribution -1.193 -0.503 0.649 1.448 sum 8.328 3.521 -14.992 17.507 Atomic orbital electron populations 1.20150 0.87247 1.02962 1.03479 1.21398 0.98802 0.91744 1.07802 1.25731 0.83230 1.01096 1.05067 1.84819 1.29109 1.15668 1.67195 1.73830 1.22389 0.91080 1.18002 1.23354 0.88520 0.98165 1.03603 1.20134 1.00318 0.87121 0.91722 1.60434 1.56076 1.03965 1.11130 1.21959 0.99024 0.88839 0.96360 1.22376 0.91741 0.95308 0.92613 1.87832 1.50588 1.64808 1.27182 1.20582 0.96372 0.95258 0.78222 1.20876 1.14273 1.23806 0.96767 0.90051 1.24762 0.94935 0.95842 0.97377 1.69874 1.27220 1.41007 1.15293 0.86846 0.80077 0.82045 0.80760 1.19880 1.20773 1.19116 0.90066 0.91038 0.91102 0.76896 0.92964 0.89607 0.82101 0.94261 0.90294 0.93736 0.93323 0.97990 0.98282 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.37 36.01 0.37 -0.39 16 2 C -0.19 -2.21 6.32 -104.42 -0.66 -2.87 16 3 C -0.07 -0.69 12.26 29.74 0.36 -0.32 16 4 O 0.10 1.25 11.20 17.17 0.19 1.44 16 5 N -0.35 -5.15 12.07 33.42 0.40 -4.74 16 6 C 0.02 0.31 6.84 -82.10 -0.56 -0.25 16 7 C 0.14 1.74 6.19 -4.97 -0.03 1.71 16 8 N -0.68 -10.33 6.49 -115.05 -0.75 -11.08 16 9 C 0.07 0.96 6.11 -3.82 -0.02 0.94 16 10 C 0.06 1.01 6.28 37.16 0.23 1.24 16 11 O -0.38 -8.77 9.85 -35.23 -0.35 -9.12 16 12 C 0.17 4.34 4.76 36.00 0.17 4.51 16 13 C -0.52 -15.35 9.99 -34.44 -0.34 -15.69 16 14 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 17 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 24 H 0.21 1.13 8.06 -52.48 -0.42 0.70 16 25 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.36 6.05 8.28 -39.29 -0.33 5.73 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.00 0.06 7.20 -51.93 -0.37 -0.31 16 33 H 0.00 -0.01 7.57 -51.93 -0.39 -0.41 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -33.02 296.15 -5.36 -38.39 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.86 Total: -0.33 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.57 Total: -9.08 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.43 Total: -42.54 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.15 Total: -7.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.02 -5.36 -38.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708443593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.020 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds