Wall clock time and date at job start Mon Mar 30 2020 04:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47442 * 239.99281 * 2 1 3 5 5 C 1.50696 * 109.46997 * 174.99707 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47017 * 119.99647 * 2 1 3 14 14 C 1.46907 * 111.00200 * 275.00169 * 13 2 1 15 15 H 1.09001 * 109.51964 * 34.87206 * 14 13 2 16 16 C 1.53238 * 109.52385 * 155.00124 * 14 13 2 17 17 C 1.53249 * 108.56312 * 175.51987 * 16 14 13 18 18 C 1.50582 * 109.16398 * 304.38060 * 17 16 14 19 19 O 1.21217 * 119.36388 * 209.11603 * 18 17 16 20 20 N 1.34149 * 121.27588 * 29.09927 * 18 17 16 21 21 C 1.34136 * 122.58620 * 359.45183 * 20 18 17 22 22 O 1.21232 * 119.35549 * 180.54695 * 21 20 18 23 23 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47663 * 300.00497 * 1 2 3 25 25 H 1.08999 * 109.47159 * 60.00509 * 1 2 3 26 26 H 1.09005 * 109.46767 * 55.00058 * 4 2 1 27 27 H 1.09002 * 109.47113 * 295.00398 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.00902 * 111.00553 * 151.04722 * 13 2 1 30 30 H 1.09001 * 109.62185 * 295.23887 * 16 14 13 31 31 H 1.08995 * 109.62212 * 55.61408 * 16 14 13 32 32 H 1.09003 * 109.51937 * 64.29306 * 17 16 14 33 33 H 1.09005 * 109.51472 * 184.47543 * 17 16 14 34 34 H 0.97001 * 118.70125 * 179.45435 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1004 -2.4133 9 14 3.3013 -2.1069 -3.6963 10 1 3.1698 -3.5372 -3.3190 11 1 1.9506 -1.5110 -3.8567 12 1 4.0452 -1.9993 -4.9771 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2227 2.3470 15 1 1.2591 0.9349 2.2903 16 6 1.9768 -0.5796 3.6483 17 6 2.1572 0.3803 4.8292 18 6 3.4637 1.1130 4.6756 19 8 4.0550 1.4878 5.6652 20 7 3.9862 1.3588 3.4647 21 6 3.3929 0.9641 2.3283 22 8 3.9222 1.2089 1.2654 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.6054 -0.2619 -2.1369 27 1 1.7516 -1.7717 -1.2054 28 1 6.0255 -1.5072 -3.1487 29 1 2.9172 -1.1205 1.0289 30 1 0.9969 -1.0531 3.7079 31 1 2.7544 -1.3431 3.6716 32 1 1.3366 1.0977 4.8440 33 1 2.1643 -0.1858 5.7607 34 1 4.8261 1.8409 3.4089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710013286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:13 Heat of formation + Delta-G solvation = -80.829771 kcal Electronic energy + Delta-G solvation = -17744.100534 eV Core-core repulsion = 14869.541139 eV Total energy + Delta-G solvation = -2874.559395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.34435 -38.88507 -36.63926 -35.29381 -33.56784 -32.27722 -30.31678 -27.89184 -26.40592 -23.68165 -23.00574 -22.26214 -19.68837 -19.09729 -17.51017 -17.21251 -16.68396 -16.12423 -15.32095 -14.94649 -14.62547 -14.41646 -14.17346 -13.76461 -12.92583 -12.86221 -12.49235 -12.22349 -12.05908 -11.88173 -11.57526 -11.31954 -10.98507 -10.85073 -10.44807 -10.27713 -10.12297 -10.06858 -9.78421 -9.46688 -9.04518 -8.48628 -8.02803 -5.96868 -3.94907 1.62812 2.88257 2.92554 3.33610 3.41410 3.44510 4.01113 4.34232 4.50308 4.60677 4.66396 5.06318 5.13164 5.22829 5.39227 5.50791 5.70099 5.78232 5.94230 5.95547 6.09420 6.15181 6.36418 6.65323 6.73337 6.92160 7.09907 7.25635 7.48325 7.64965 7.82174 7.89107 8.01116 8.63260 9.20594 9.65441 11.15951 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.006854 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.241079 B = 4083.977725 C = 4632.942938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.091 3.909 3 H 0.049 0.951 4 C -0.016 4.016 5 C -0.526 4.526 6 H 0.093 0.907 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.290 1.290 13 N -0.653 5.653 14 C 0.071 3.929 15 H 0.113 0.887 16 C -0.112 4.112 17 C -0.141 4.141 18 C 0.526 3.474 19 O -0.520 6.520 20 N -0.676 5.676 21 C 0.473 3.527 22 O -0.456 6.456 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.261 0.739 29 H 0.366 0.634 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 2.043 12.540 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.068 0.932 4 C -0.053 4.053 5 C -0.564 4.564 6 H 0.110 0.890 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.217 1.217 13 N -0.287 5.287 14 C -0.044 4.044 15 H 0.130 0.870 16 C -0.150 4.150 17 C -0.181 4.181 18 C 0.315 3.685 19 O -0.394 6.394 20 N -0.343 5.343 21 C 0.258 3.742 22 O -0.323 6.323 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.189 0.811 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.203 1.925 12.476 16.232 hybrid contribution 0.932 0.295 -1.115 1.483 sum -9.271 2.220 11.362 14.831 Atomic orbital electron populations 1.21879 0.96469 1.01528 0.99940 1.21538 0.92859 0.97173 0.90219 0.93249 1.19758 0.97568 0.95599 0.92399 1.21428 0.89767 1.34737 1.10464 0.88953 1.25029 0.94632 0.95932 0.97755 1.69935 1.06547 1.45438 1.32186 0.86848 0.80449 0.80543 0.81797 1.20416 1.19168 1.21665 1.60937 1.35043 1.28529 1.04159 1.21939 0.92673 0.94853 0.94929 0.86973 1.21741 1.05337 0.97668 0.90296 1.21938 0.94341 0.99861 1.01995 1.21019 0.87527 0.77879 0.82094 1.90755 1.61465 1.50004 1.37192 1.45125 1.26784 1.54441 1.07919 1.22727 0.88982 0.79262 0.83192 1.90978 1.63272 1.49552 1.28544 0.92477 0.94138 0.93024 0.96085 0.96293 0.92961 0.81051 0.88245 0.90240 0.87286 0.86921 0.75483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.40 37.15 0.35 -1.77 16 2 C 0.09 1.72 2.08 -67.72 -0.14 1.58 16 3 H 0.05 1.02 6.84 -51.93 -0.36 0.66 16 4 C -0.02 -0.36 3.64 -27.88 -0.10 -0.47 16 5 C -0.53 -14.70 8.67 -34.44 -0.30 -15.00 16 6 H 0.09 2.78 5.61 -52.49 -0.29 2.49 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 N -0.65 -10.97 5.93 -100.88 -0.60 -11.56 16 14 C 0.07 0.92 2.53 -68.79 -0.17 0.75 16 15 H 0.11 1.28 7.12 -51.93 -0.37 0.91 16 16 C -0.11 -1.05 5.70 -26.48 -0.15 -1.20 16 17 C -0.14 -1.15 6.07 -27.81 -0.17 -1.31 16 18 C 0.53 6.33 7.74 -11.32 -0.09 6.24 16 19 O -0.52 -7.83 17.87 5.61 0.10 -7.73 16 20 N -0.68 -8.98 5.09 -11.75 -0.06 -9.04 16 21 C 0.47 7.38 7.31 -11.33 -0.08 7.30 16 22 O -0.46 -9.58 13.96 5.60 0.08 -9.50 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.51 7.43 -51.93 -0.39 0.12 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 27 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.37 7.29 6.79 -39.29 -0.27 7.02 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.41 5.36 8.79 -40.82 -0.36 5.00 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -33.72 278.14 -5.64 -39.36 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.50 Total: 6.49 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.95 Total: -2.01 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.12 Total: -47.92 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.18 Total: -17.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.72 -5.64 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.470 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds