Wall clock time and date at job start Mon Mar 30 2020 04:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.67130 * 2 1 4 4 C 1.53075 * 109.67660 * 120.52728 * 2 1 3 5 5 C 1.50173 * 109.89741 * 168.61656 * 4 2 1 6 6 O 1.21281 * 118.24087 * 162.41329 * 5 4 2 7 7 N 1.33351 * 123.50970 * 342.45976 * 5 4 2 8 8 C 1.45747 * 124.10646 * 2.17968 * 7 5 4 9 9 H 1.09007 * 109.13291 * 220.73866 * 8 7 5 10 10 C 1.50705 * 109.30259 * 101.26076 * 8 7 5 11 11 O 1.21274 * 119.99627 * 338.95824 * 10 8 7 12 12 N 1.34777 * 120.00180 * 158.96171 * 10 8 7 13 13 C 1.46496 * 119.99893 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.46970 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00073 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00102 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99752 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47150 * 90.00234 * 18 16 14 20 20 H 1.48498 * 109.46990 * 209.99714 * 18 16 14 21 21 H 1.48501 * 109.47452 * 330.00113 * 18 16 14 22 22 C 1.52922 * 110.49031 * 340.94271 * 8 7 5 23 23 H 1.09002 * 109.47153 * 180.50177 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.50368 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.50349 * 1 2 3 26 26 H 1.08995 * 109.39978 * 288.76918 * 4 2 1 27 27 H 1.08999 * 109.39385 * 48.50704 * 4 2 1 28 28 H 0.97002 * 117.94228 * 182.20086 * 7 5 4 29 29 H 0.97001 * 119.99566 * 359.97438 * 12 10 8 30 30 H 1.09003 * 109.47038 * 299.99552 * 13 12 10 31 31 H 1.08989 * 109.47204 * 59.99931 * 13 12 10 32 32 H 0.96998 * 119.99759 * 180.02562 * 17 16 14 33 33 H 1.08992 * 109.60512 * 291.00035 * 22 8 7 34 34 H 1.08999 * 109.60255 * 170.51167 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0454 -0.7321 1.2416 5 6 3.5210 -0.9799 1.1130 6 8 4.1473 -1.2483 2.1163 7 7 4.1795 -0.9197 -0.0450 8 6 3.5643 -0.5635 -1.3173 9 1 3.9616 -1.2102 -2.0997 10 6 3.8903 0.8712 -1.6439 11 8 4.2231 1.6334 -0.7613 12 7 3.8118 1.3072 -2.9168 13 6 4.1281 2.7020 -3.2341 14 6 3.9633 2.9302 -4.7146 15 1 3.6543 2.1173 -5.3551 16 6 4.2080 4.1763 -5.2515 17 7 4.0647 4.3753 -6.5436 18 14 4.7432 5.5819 -4.1437 19 1 6.2252 5.6039 -4.0528 20 1 4.2629 6.8682 -4.7092 21 1 4.1669 5.3911 -2.7884 22 6 2.0463 -0.7329 -1.2441 23 1 -0.3633 -1.0276 0.0090 24 1 -0.3633 0.5060 -0.8945 25 1 -0.3634 0.5216 0.8855 26 1 1.8558 -0.1234 2.1256 27 1 1.5259 -1.6851 1.3415 28 1 5.1272 -1.1262 -0.0402 29 1 3.5459 0.6974 -3.6227 30 1 3.4530 3.3609 -2.6879 31 1 5.1571 2.9159 -2.9454 32 1 4.2373 5.2518 -6.9213 33 1 1.7995 -1.7922 -1.1731 34 1 1.5873 -0.3070 -2.1362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713328737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:15 Heat of formation + Delta-G solvation = -117.647408 kcal Electronic energy + Delta-G solvation = -17461.945964 eV Core-core repulsion = 14585.790036 eV Total energy + Delta-G solvation = -2876.155927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.90012 -40.12413 -37.63638 -36.19335 -35.05859 -34.43115 -31.41610 -29.63121 -28.75813 -25.75961 -23.95608 -22.40153 -21.93525 -20.36794 -19.10248 -18.42359 -17.56333 -17.53693 -16.75790 -16.59927 -16.11237 -15.92313 -15.32840 -14.92411 -14.55543 -14.43008 -14.32288 -13.80439 -13.57365 -13.08267 -13.00265 -12.93583 -12.73592 -12.32960 -11.96235 -11.77664 -11.65147 -11.62294 -11.25384 -10.92504 -10.86077 -10.07879 -9.95274 -8.40321 -6.46438 1.30365 1.34097 1.44421 1.46118 1.64070 2.16066 2.26566 2.56430 2.95534 3.52533 3.63159 3.68511 3.77429 3.93236 4.27608 4.44390 4.65444 4.68149 4.75639 4.79513 4.84434 4.97088 5.01839 5.14677 5.26164 5.31883 5.42426 5.49742 5.67317 6.07658 6.23486 6.55281 6.80655 7.11413 7.16295 7.38341 8.74113 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034616 B = 0.005797 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.668772 B = 4828.740798 C = 5041.133942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.046 0.954 4 C -0.122 4.122 5 C 0.522 3.478 6 O -0.608 6.608 7 N -0.694 5.694 8 C 0.132 3.868 9 H 0.151 0.849 10 C 0.482 3.518 11 O -0.591 6.591 12 N -0.696 5.696 13 C 0.232 3.768 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.030 3.970 17 N -0.929 5.929 18 Si 0.931 3.069 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.263 1.263 22 C -0.118 4.118 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.401 0.599 29 H 0.413 0.587 30 H 0.011 0.989 31 H 0.007 0.993 32 H 0.272 0.728 33 H 0.122 0.878 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -13.042 9.022 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.065 0.935 4 C -0.161 4.161 5 C 0.312 3.688 6 O -0.490 6.490 7 N -0.342 5.342 8 C 0.023 3.977 9 H 0.168 0.832 10 C 0.268 3.732 11 O -0.472 6.472 12 N -0.347 5.347 13 C 0.108 3.892 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.171 4.171 17 N -0.568 5.568 18 Si 0.755 3.245 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.187 1.187 22 C -0.156 4.156 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.150 0.850 28 H 0.236 0.764 29 H 0.249 0.751 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.202 -12.442 9.982 17.502 hybrid contribution 0.952 1.017 -0.248 1.415 sum -6.250 -11.425 9.733 16.258 Atomic orbital electron populations 1.21756 0.91809 1.03588 1.02409 1.21282 0.98348 0.98660 0.93847 0.93504 1.21735 0.89455 1.04509 1.00396 1.20777 0.91954 0.74236 0.81868 1.90715 1.69911 1.51897 1.36493 1.45174 1.13690 1.68065 1.07315 1.21171 0.97995 0.91110 0.87456 0.83205 1.21943 0.77113 0.91896 0.82257 1.90675 1.49674 1.58874 1.48000 1.45981 1.67308 1.12765 1.08619 1.19072 0.94705 0.80633 0.94814 1.21287 1.47534 0.97675 0.91554 0.91588 1.25518 0.94579 1.00951 0.96049 1.69965 1.49636 1.24581 1.12605 0.85961 0.79430 0.79374 0.79718 1.19349 1.19878 1.18746 1.22063 0.89272 1.04456 0.99789 0.89875 0.92181 0.92330 0.88690 0.84967 0.76354 0.75074 0.97127 0.97514 0.91891 0.85946 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.10 -2.00 2.74 -10.65 -0.03 -2.03 16 3 H 0.05 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.12 -2.45 5.35 29.71 0.16 -2.29 16 5 C 0.52 14.59 7.71 87.71 0.68 15.27 16 6 O -0.61 -22.12 17.78 -3.03 -0.05 -22.18 16 7 N -0.69 -17.12 4.60 -450.23 -2.07 -19.19 16 8 C 0.13 2.75 3.62 44.36 0.16 2.91 16 9 H 0.15 1.96 8.14 -2.38 -0.02 1.94 16 10 C 0.48 15.96 6.26 87.66 0.55 16.51 16 11 O -0.59 -25.65 16.05 -3.01 -0.05 -25.70 16 12 N -0.70 -24.63 5.55 -466.80 -2.59 -27.22 16 13 C 0.23 10.79 4.50 85.64 0.38 11.17 16 14 C -0.54 -28.48 9.83 25.60 0.25 -28.23 16 15 H 0.07 3.58 7.84 -2.91 -0.02 3.56 16 16 C 0.03 1.63 5.47 84.65 0.46 2.09 16 17 N -0.93 -53.96 13.96 21.45 0.30 -53.66 16 18 Si 0.93 43.31 27.47 68.60 1.88 45.20 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 22 C -0.12 -1.83 4.75 30.68 0.15 -1.69 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.13 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.40 9.72 8.80 -92.71 -0.82 8.90 16 29 H 0.41 11.96 8.32 -92.71 -0.77 11.19 16 30 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 31 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.12 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 Total: -1.00 -74.76 285.58 0.32 -74.44 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.52 Total: 15.89 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 3.42 Total: 12.42 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.36 Total: -100.07 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.10 Total: -47.88 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -74.76 0.32 -74.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713328737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.203 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds