Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48501 * 109.47396 * 270.00113 * 3 2 1 5 5 H 1.48499 * 109.46994 * 29.99789 * 3 2 1 6 6 H 1.48500 * 109.47137 * 150.00046 * 3 2 1 7 7 C 1.38946 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00156 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99978 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99744 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00235 * 179.97438 * 10 9 7 13 13 C 1.52163 * 109.89253 * 275.42551 * 12 10 9 14 14 N 1.48751 * 105.71899 * 272.53525 * 13 12 10 15 15 C 1.49181 * 108.26301 * 356.37490 * 14 13 12 16 16 C 1.52896 * 103.28137 * 335.55632 * 15 14 13 17 17 H 1.08998 * 111.24866 * 284.66885 * 16 15 14 18 18 C 1.51557 * 117.32923 * 156.12828 * 16 15 14 19 19 O 1.43896 * 106.54194 * 185.40131 * 18 16 15 20 20 C 1.42337 * 116.99757 * 57.96175 * 19 18 16 21 21 C 1.51472 * 109.87853 * 46.92786 * 12 10 9 22 22 H 0.96996 * 120.00138 * 0.02562 * 1 2 3 23 23 H 0.96993 * 119.99930 * 359.97438 * 9 7 2 24 24 H 1.08998 * 110.19849 * 153.47460 * 13 12 10 25 25 H 1.08999 * 110.26879 * 31.63003 * 13 12 10 26 26 H 1.00896 * 111.00081 * 118.44475 * 14 13 12 27 27 H 1.09000 * 110.65040 * 94.00151 * 15 14 13 28 28 H 1.08996 * 110.65601 * 217.10321 * 15 14 13 29 29 H 1.08997 * 110.03736 * 66.14775 * 18 16 15 30 30 H 1.08994 * 110.03600 * 304.65680 * 18 16 15 31 31 H 1.09007 * 108.97373 * 185.71941 * 20 19 18 32 32 H 1.09005 * 108.97586 * 67.01819 * 20 19 18 33 33 H 1.08997 * 110.01494 * 176.41057 * 21 12 10 34 34 H 1.08999 * 110.01257 * 297.75144 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 0.0000 11 8 3.4474 -3.4208 -0.0009 12 6 5.5608 -2.3704 0.0000 13 6 6.0786 -2.2351 -1.4244 14 7 6.1561 -3.6213 -1.9584 15 6 5.7857 -4.5652 -0.8642 16 6 6.1035 -3.7739 0.4049 17 1 7.1775 -3.7329 0.5863 18 6 5.3670 -4.1639 1.6708 19 8 5.7397 -3.2023 2.6743 20 6 5.4727 -1.8337 2.3887 21 6 6.0759 -1.3976 1.0406 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3632 0.0004 24 1 7.0673 -1.7763 -1.4235 25 1 5.3884 -1.6397 -2.0221 26 1 5.5489 -3.7361 -2.7560 27 1 4.7242 -4.8089 -0.9097 28 1 6.3915 -5.4698 -0.9152 29 1 5.6655 -5.1645 1.9833 30 1 4.2907 -4.1295 1.5023 31 1 5.8952 -1.2171 3.1821 32 1 4.3937 -1.6816 2.3602 33 1 7.1639 -1.4422 1.0867 34 1 5.7542 -0.3852 0.7963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715421636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = -61.563949 kcal Electronic energy + Delta-G solvation = -18756.682526 eV Core-core repulsion = 15882.958560 eV Total energy + Delta-G solvation = -2873.723966 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05012 -37.32704 -36.47808 -34.28148 -32.64882 -31.45586 -30.52720 -27.91774 -25.27350 -24.32745 -22.56131 -21.66198 -20.56675 -19.18212 -17.86538 -16.34176 -15.94669 -15.42233 -15.38784 -14.96404 -14.67066 -14.24493 -13.83347 -13.57129 -13.01784 -12.72520 -12.53859 -12.37089 -12.20751 -11.80572 -11.54942 -11.34248 -11.17316 -10.81708 -10.70419 -10.29270 -10.11413 -9.91418 -9.63117 -9.23560 -8.39183 -8.27196 -8.24412 -6.44822 -3.96748 2.91793 2.96851 3.06239 3.51423 3.97870 4.07966 4.30409 4.39902 4.53739 4.91728 5.02113 5.15086 5.44801 5.48556 5.54759 5.62282 5.65777 5.75660 5.89855 5.95971 6.04076 6.06681 6.13171 6.24603 6.34216 6.38939 6.66062 6.90701 7.41914 7.51418 7.61268 8.00119 8.43052 8.79440 9.27208 9.64509 10.67624 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.009489 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.456047 B = 2949.988501 C = 3124.361865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.578 5.578 10 C 0.456 3.544 11 O -0.569 6.569 12 C -0.111 4.111 13 C 0.066 3.934 14 N -0.681 5.681 15 C 0.048 3.952 16 C -0.106 4.106 17 H 0.084 0.916 18 C 0.051 3.949 19 O -0.394 6.394 20 C 0.062 3.938 21 C -0.136 4.136 22 H 0.275 0.725 23 H 0.371 0.629 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.338 0.662 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.444 -1.203 0.318 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.138 0.862 9 N -0.214 5.214 10 C 0.243 3.757 11 O -0.454 6.454 12 C -0.115 4.115 13 C -0.064 4.064 14 N -0.309 5.309 15 C -0.080 4.080 16 C -0.126 4.126 17 H 0.102 0.898 18 C -0.025 4.025 19 O -0.313 6.313 20 C -0.015 4.015 21 C -0.174 4.174 22 H 0.086 0.914 23 H 0.204 0.796 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.152 0.848 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.588 -1.886 0.547 12.740 hybrid contribution -0.483 1.810 -0.256 1.891 sum 12.105 -0.076 0.291 12.109 Atomic orbital electron populations 1.69611 1.05657 1.27742 1.48283 1.25046 0.95486 0.98009 0.97271 0.86743 0.79913 0.84132 0.79122 1.19423 1.19865 1.19399 1.19446 0.79117 0.96696 1.48592 0.86159 1.42274 1.07537 1.06208 1.65428 1.19402 0.87566 0.84515 0.84200 1.90415 1.69394 1.30611 1.54985 1.21682 0.95007 0.98322 0.96532 1.22238 1.00452 0.91348 0.92316 1.62766 1.56629 1.03003 1.08456 1.22680 1.01625 0.94910 0.88785 1.22388 0.99972 0.94166 0.96026 0.89762 1.22988 1.02377 0.91164 0.85960 1.87636 1.84697 1.15249 1.43698 1.22566 1.00317 0.82813 0.95851 1.22022 1.01408 0.98750 0.95225 0.91403 0.79578 0.90322 0.92264 0.84795 0.90173 0.91000 0.89581 0.88053 0.89236 0.92461 0.90326 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.79 13.96 55.50 0.77 -24.01 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.87 18.79 27.74 -169.99 -4.71 14.07 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 7 C -0.31 -8.41 10.16 -14.94 -0.15 -8.57 16 8 H 0.12 3.74 7.39 -52.48 -0.39 3.35 16 9 N -0.58 -13.20 4.68 -10.96 -0.05 -13.25 16 10 C 0.46 9.82 4.19 -10.99 -0.05 9.77 16 11 O -0.57 -13.93 11.29 5.55 0.06 -13.87 16 12 C -0.11 -1.88 0.70 -155.35 -0.11 -1.99 16 13 C 0.07 1.02 6.78 -3.22 -0.02 1.00 16 14 N -0.68 -10.36 7.48 -111.12 -0.83 -11.20 16 15 C 0.05 0.77 6.83 -2.61 -0.02 0.75 16 16 C -0.11 -1.71 2.47 -89.89 -0.22 -1.93 16 17 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 18 C 0.05 0.88 6.44 36.43 0.23 1.12 16 19 O -0.39 -6.98 10.62 -35.23 -0.37 -7.36 16 20 C 0.06 1.02 6.53 37.68 0.25 1.27 16 21 C -0.14 -2.04 5.22 -26.98 -0.14 -2.18 16 22 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.37 7.65 4.54 -40.82 -0.19 7.47 16 24 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 25 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 26 H 0.34 4.95 8.93 -39.29 -0.35 4.60 16 27 H 0.08 1.47 6.11 -51.93 -0.32 1.16 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 2.10 4.97 -51.93 -0.26 1.85 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.10 6.98 -51.93 -0.36 0.74 16 33 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.07 1.06 7.09 -51.93 -0.37 0.69 16 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -29.44 262.15 -5.84 -35.29 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -4.33 Total: 16.02 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.32 Total: 0.36 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.11 Total: -48.46 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.31 Total: -21.23 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.44 -5.84 -35.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715421636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds