Wall clock time and date at job start Mon Mar 30 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47421 * 269.99907 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99898 * 3 2 1 6 6 H 1.48505 * 109.47574 * 149.99830 * 3 2 1 7 7 C 1.38946 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99989 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00543 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00320 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99936 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.52945 * 106.11092 * 297.72078 * 12 10 9 14 14 N 1.47622 * 107.01216 * 249.55995 * 13 12 10 15 15 C 1.47774 * 107.60389 * 18.13641 * 14 13 12 16 16 C 1.52191 * 105.62302 * 184.50590 * 12 10 9 17 17 H 1.09003 * 111.17509 * 332.54878 * 16 12 10 18 18 C 1.52945 * 111.79477 * 207.72479 * 16 12 10 19 19 O 1.42723 * 109.77931 * 49.56373 * 18 16 12 20 20 C 1.42662 * 112.77179 * 293.27831 * 19 18 16 21 21 C 1.49581 * 106.53429 * 59.30523 * 12 10 9 22 22 H 0.96995 * 119.99829 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99495 * 359.97438 * 9 7 2 24 24 H 1.08996 * 109.92897 * 8.89735 * 13 12 10 25 25 H 1.09000 * 109.92944 * 130.22573 * 13 12 10 26 26 H 1.00904 * 111.00394 * 139.76595 * 14 13 12 27 27 H 1.09002 * 110.33021 * 88.16194 * 15 14 13 28 28 H 1.08991 * 110.33680 * 210.29611 * 15 14 13 29 29 H 1.09002 * 109.40958 * 289.48762 * 18 16 12 30 30 H 1.09001 * 109.40637 * 169.64042 * 18 16 12 31 31 H 1.09001 * 109.31663 * 183.04949 * 20 19 18 32 32 H 1.08993 * 109.32121 * 302.49076 * 20 19 18 33 33 H 1.09002 * 108.39720 * 27.66493 * 21 12 10 34 34 H 1.08999 * 108.25650 * 270.38481 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 0.4402 -4.8884 1.3022 14 7 1.0458 -5.9230 2.1637 15 6 2.4016 -6.1992 1.6447 16 6 2.3044 -5.9484 0.1161 17 1 3.2545 -5.6166 -0.3026 18 6 1.8471 -7.2592 -0.5257 19 8 1.3457 -7.0055 -1.8376 20 6 0.1437 -6.2371 -1.8303 21 6 0.3966 -4.8658 -1.2316 22 1 -0.4849 0.8400 -0.0004 23 1 0.3535 -2.3906 0.0005 24 1 0.4967 -3.9168 1.7929 25 1 -0.5989 -5.1417 1.0921 26 1 1.0819 -5.6176 3.1247 27 1 3.1252 -5.5196 2.0949 28 1 2.6799 -7.2340 1.8440 29 1 1.0605 -7.7054 0.0828 30 1 2.6912 -7.9462 -0.5871 31 1 -0.2176 -6.1232 -2.8524 32 1 -0.6117 -6.7548 -1.2394 33 1 0.8831 -4.2460 -1.9848 34 1 -0.5650 -4.4151 -0.9861 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715421668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:24 Heat of formation + Delta-G solvation = -103.790284 kcal Electronic energy + Delta-G solvation = -18345.260712 eV Core-core repulsion = 15469.705675 eV Total energy + Delta-G solvation = -2875.555037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.22436 -39.36335 -37.69305 -36.11428 -34.31106 -33.00111 -31.92619 -29.32987 -27.08974 -25.94408 -24.38615 -22.62698 -21.83472 -20.15591 -19.67525 -18.38392 -17.37673 -17.08695 -16.88024 -16.11414 -15.96743 -15.71167 -15.48164 -15.31412 -14.35979 -14.26130 -13.95977 -13.63907 -13.36479 -13.19557 -12.96170 -12.94335 -12.51688 -12.37255 -12.20648 -12.02405 -11.70082 -11.56107 -11.24634 -10.65983 -10.17802 -10.09004 -9.50988 -8.53712 -6.03384 1.32115 1.36721 1.49058 1.95373 2.23287 2.91968 3.00997 3.11199 3.31990 3.41623 3.67972 3.80435 3.95408 4.11852 4.26312 4.35209 4.49804 4.55351 4.65053 4.67663 4.76355 4.80600 4.87623 4.93637 5.11150 5.18596 5.30678 5.34005 5.69445 5.91346 6.24611 6.31338 6.49702 7.03405 7.45423 7.99796 8.63214 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.007343 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.180214 B = 3812.085784 C = 3993.147491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.340 4.340 8 H 0.075 0.925 9 N -0.563 5.563 10 C 0.435 3.565 11 O -0.632 6.632 12 C -0.059 4.059 13 C 0.058 3.942 14 N -0.662 5.662 15 C 0.054 3.946 16 C -0.112 4.112 17 H 0.076 0.924 18 C 0.076 3.924 19 O -0.397 6.397 20 C 0.070 3.930 21 C -0.135 4.135 22 H 0.280 0.720 23 H 0.396 0.604 24 H 0.032 0.968 25 H 0.105 0.895 26 H 0.347 0.653 27 H 0.021 0.979 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -11.634 1.303 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.093 0.907 9 N -0.198 5.198 10 C 0.223 3.777 11 O -0.520 6.520 12 C -0.063 4.063 13 C -0.072 4.072 14 N -0.291 5.291 15 C -0.075 4.075 16 C -0.132 4.132 17 H 0.094 0.906 18 C -0.001 4.001 19 O -0.315 6.315 20 C -0.007 4.007 21 C -0.173 4.173 22 H 0.089 0.911 23 H 0.230 0.770 24 H 0.050 0.950 25 H 0.123 0.877 26 H 0.163 0.837 27 H 0.040 0.960 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.128 -12.063 0.842 12.491 hybrid contribution 0.572 2.380 0.498 2.498 sum -2.555 -9.684 1.340 10.104 Atomic orbital electron populations 1.69657 1.06731 1.29489 1.49629 1.26026 0.96575 1.02317 0.95963 0.84951 0.77882 0.76908 0.78742 1.19576 1.19153 1.19966 1.19657 0.92593 0.84148 1.50572 0.90670 1.41886 1.09197 1.04497 1.64261 1.21098 0.88133 0.86528 0.81945 1.90446 1.16090 1.87713 1.57748 1.20195 0.96126 0.92594 0.97353 1.22615 0.99673 0.93873 0.91001 1.62351 1.18607 1.41880 1.06310 1.22890 0.89835 1.02008 0.92773 1.22238 0.98235 0.95561 0.97144 0.90563 1.22691 1.00013 0.94091 0.83275 1.87922 1.42522 1.72564 1.28538 1.22332 0.86799 0.88792 1.02729 1.21138 1.00307 1.00647 0.95244 0.91075 0.76955 0.95001 0.87720 0.83651 0.96040 0.86999 0.90550 0.87375 0.87090 0.90633 0.93841 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.99 13.05 21.66 0.28 -48.71 16 2 C -0.01 -0.44 5.50 84.92 0.47 0.02 16 3 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.56 -29.31 4.65 -306.99 -1.43 -30.74 16 10 C 0.44 21.35 5.43 87.66 0.48 21.83 16 11 O -0.63 -36.08 14.54 -3.05 -0.04 -36.13 16 12 C -0.06 -2.13 0.65 -54.31 -0.04 -2.16 16 13 C 0.06 1.85 6.55 86.15 0.56 2.41 16 14 N -0.66 -18.13 7.42 -506.11 -3.76 -21.89 16 15 C 0.05 1.59 6.79 86.89 0.59 2.18 16 16 C -0.11 -3.80 2.71 -10.32 -0.03 -3.83 16 17 H 0.08 3.19 6.51 -2.39 -0.02 3.17 16 18 C 0.08 2.02 5.92 71.96 0.43 2.45 16 19 O -0.40 -11.84 10.81 -148.98 -1.61 -13.45 16 20 C 0.07 1.80 6.83 71.57 0.49 2.29 16 21 C -0.13 -4.36 4.65 29.09 0.14 -4.22 16 22 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 23 H 0.40 19.62 7.50 -92.71 -0.69 18.92 16 24 H 0.03 1.17 7.11 -2.39 -0.02 1.16 16 25 H 0.10 2.81 7.66 -2.39 -0.02 2.79 16 26 H 0.35 8.62 8.91 -89.69 -0.80 7.82 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 2.55 7.84 -2.39 -0.02 2.53 16 29 H 0.08 1.79 7.85 -2.39 -0.02 1.78 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 34 H 0.09 2.67 7.67 -2.39 -0.02 2.65 16 Total: -1.00 -67.48 272.62 -1.00 -68.48 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.37 Total: 35.18 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 3.90 Total: 2.20 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.90 Total: -101.34 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -1.66 Total: -49.57 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.48 -1.00 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715421668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.307 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds