Wall clock time and date at job start Mon Mar 30 2020 03:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00230 * 2 1 4 4 C 1.52998 * 109.47343 * 125.00289 * 3 2 1 5 5 O 1.42905 * 113.38079 * 313.07945 * 4 3 2 6 6 C 1.53506 * 114.17302 * 180.02562 * 4 3 2 7 7 N 1.47486 * 87.93221 * 220.32775 * 6 4 3 8 8 C 1.46902 * 110.99695 * 138.70374 * 7 6 4 9 9 C 1.50706 * 109.46862 * 170.00231 * 8 7 6 10 10 O 1.21295 * 119.99572 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99905 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99819 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99761 * 359.97438 * 12 11 9 14 14 C 1.38946 * 119.99711 * 179.97438 * 12 11 9 15 15 N 1.31410 * 119.99614 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00235 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47310 * 90.00057 * 16 14 12 18 18 H 1.48507 * 109.46956 * 210.00318 * 16 14 12 19 19 H 1.48495 * 109.47139 * 329.99814 * 16 14 12 20 20 C 1.47474 * 87.83457 * 27.00875 * 7 6 4 21 21 H 1.08002 * 120.00233 * 179.97438 * 1 2 3 22 22 H 1.07997 * 119.99633 * 359.97438 * 1 2 3 23 23 H 1.08006 * 119.99851 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47322 * 4.99914 * 3 2 1 25 25 H 1.09007 * 109.47229 * 245.00128 * 3 2 1 26 26 H 0.96706 * 113.99595 * 46.92515 * 5 4 3 27 27 H 1.09000 * 113.48168 * 105.56309 * 6 4 3 28 28 H 1.08999 * 113.47579 * 335.09413 * 6 4 3 29 29 H 1.08998 * 109.47140 * 289.99304 * 8 7 6 30 30 H 1.08997 * 109.47636 * 49.99763 * 8 7 6 31 31 H 0.97000 * 120.00476 * 359.97438 * 11 9 8 32 32 H 0.97008 * 120.00075 * 179.97438 * 15 14 12 33 33 H 1.09008 * 113.47654 * 87.75975 * 20 7 6 34 34 H 1.09003 * 113.47610 * 218.16168 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 2.4416 0.9187 2.4137 6 6 3.8622 2.6221 1.2849 7 7 5.0207 1.7861 1.6513 8 6 6.2423 2.2592 0.9867 9 6 7.4374 1.5469 1.5661 10 8 7.2861 0.7263 2.4464 11 7 8.6741 1.8225 1.1068 12 6 9.7612 1.1741 1.6336 13 1 9.6265 0.4428 2.4169 14 6 11.0362 1.4578 1.1598 15 7 12.0782 0.8367 1.6650 16 14 11.2691 2.7222 -0.1955 17 1 11.4644 4.0647 0.4083 18 1 12.4614 2.3654 -1.0057 19 1 10.0665 2.7413 -1.0665 20 6 4.3971 0.6871 0.8909 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3587 2.1316 0.0895 25 1 2.6214 1.4026 -0.9314 26 1 1.9210 0.1065 2.3460 27 1 3.5347 3.2852 2.0857 28 1 3.9829 3.1381 0.3324 29 1 6.1785 2.0517 -0.0815 30 1 6.3484 3.3328 1.1426 31 1 8.7951 2.4790 0.4031 32 1 12.9683 1.0345 1.3340 33 1 4.6606 0.6866 -0.1668 34 1 4.5237 -0.2900 1.3572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720861003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:10 Heat of formation + Delta-G solvation = -15.098848 kcal Electronic energy + Delta-G solvation = -16982.688335 eV Core-core repulsion = 14110.979247 eV Total energy + Delta-G solvation = -2871.709088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61755 -38.09520 -35.98351 -34.32414 -33.87748 -31.64285 -30.41664 -27.74741 -26.00574 -24.89611 -22.65339 -20.20869 -19.86436 -19.28891 -18.26767 -16.94224 -16.05123 -15.66097 -15.53648 -15.17505 -14.86823 -14.14933 -14.08595 -13.32426 -13.09029 -13.06096 -12.88269 -12.39549 -12.21896 -11.91692 -11.71022 -11.57389 -11.26917 -10.98818 -10.61965 -10.56909 -9.94264 -9.84317 -9.59342 -9.52360 -8.79877 -8.26133 -8.13375 -6.27160 -3.78318 1.91860 3.03774 3.08643 3.16369 3.77184 3.81811 4.03045 4.13188 4.33006 4.55533 4.69431 4.84247 4.91258 5.16369 5.22026 5.24902 5.41612 5.49794 5.57232 5.59077 5.61763 5.70622 5.81066 5.97505 6.04915 6.30091 6.40642 6.50285 7.11954 7.61855 7.63276 8.18843 8.65307 9.00078 9.46929 9.89780 10.86292 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.050483 B = 0.004591 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.506090 B = 6097.232566 C = 6254.330669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C -0.110 4.110 4 C 0.109 3.891 5 O -0.523 6.523 6 C 0.006 3.994 7 N -0.428 5.428 8 C 0.003 3.997 9 C 0.456 3.544 10 O -0.554 6.554 11 N -0.595 5.595 12 C -0.303 4.303 13 H 0.119 0.881 14 C 0.040 3.960 15 N -0.884 5.884 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.271 1.271 20 C -0.021 4.021 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.375 0.625 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.369 0.631 32 H 0.273 0.727 33 H 0.072 0.928 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.125 3.496 -8.247 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.148 4.148 4 C 0.067 3.933 5 O -0.329 6.329 6 C -0.123 4.123 7 N -0.149 5.149 8 C -0.129 4.129 9 C 0.241 3.759 10 O -0.434 6.434 11 N -0.236 5.236 12 C -0.432 4.432 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.524 5.524 16 Si 0.707 3.293 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.150 4.150 21 H 0.117 0.883 22 H 0.115 0.885 23 H 0.131 0.869 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.222 0.778 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.202 0.798 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.443 3.358 -6.700 20.837 hybrid contribution 0.140 0.625 -2.280 2.368 sum -19.303 3.983 -8.980 21.659 Atomic orbital electron populations 1.23919 0.95863 1.01990 1.00366 1.22927 0.96121 0.98526 1.00516 1.21308 0.98773 0.96310 0.98412 1.22126 0.90323 0.96435 0.84448 1.86562 1.69815 1.46428 1.30048 1.24052 0.91147 0.95897 1.01254 1.68877 0.99044 1.03919 1.43086 1.22587 0.92778 1.00659 0.96905 1.19570 0.83292 0.86623 0.86379 1.90575 1.84997 1.35857 1.31993 1.42218 1.06360 1.38999 1.35995 1.19434 0.83163 1.20858 1.19716 0.86340 1.25027 0.95175 0.97921 0.98125 1.69626 0.98720 1.41726 1.42337 0.86664 0.78457 0.82099 0.82092 1.19635 1.20228 1.19622 1.24647 0.93657 0.99167 0.97531 0.88319 0.88521 0.86900 0.90407 0.89711 0.77758 0.88859 0.90365 0.92242 0.89205 0.79829 0.91682 0.90950 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.32 29.01 0.42 -0.85 16 2 C -0.16 -1.26 8.14 -36.03 -0.29 -1.55 16 3 C -0.11 -0.93 5.44 -27.88 -0.15 -1.09 16 4 C 0.11 1.28 1.64 -90.09 -0.15 1.13 16 5 O -0.52 -6.91 13.52 -35.23 -0.48 -7.38 16 6 C 0.01 0.07 7.11 -7.55 -0.05 0.02 16 7 N -0.43 -7.37 5.82 -246.08 -1.43 -8.81 16 8 C 0.00 0.05 5.30 -4.97 -0.03 0.02 16 9 C 0.46 10.90 7.85 -10.98 -0.09 10.82 16 10 O -0.55 -15.83 16.01 5.54 0.09 -15.74 16 11 N -0.60 -14.64 5.09 -10.96 -0.06 -14.70 16 12 C -0.30 -8.80 10.16 -14.93 -0.15 -8.96 16 13 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -26.28 13.96 55.50 0.77 -25.51 16 16 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 20 C -0.02 -0.30 7.13 -7.55 -0.05 -0.35 16 21 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 22 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 23 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 24 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 25 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 26 H 0.37 3.63 7.69 45.56 0.35 3.98 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 30 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 31 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 0.91 7.21 -51.92 -0.37 0.53 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -35.24 291.00 -6.02 -41.26 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.94 Total: 11.33 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.65 Total: 0.22 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.71 Total: -49.01 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.39 Total: -23.13 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.24 -6.02 -41.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720861003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.159 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds