Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 N 1.40107 * 119.99731 * 179.97438 * 14 12 2 16 16 C 1.34778 * 119.99731 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00059 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99951 * 180.02562 * 16 15 14 19 19 C 1.53778 * 113.61360 * 279.14048 * 18 16 15 20 20 C 1.53952 * 87.01832 * 220.04595 * 19 18 16 21 21 C 1.53771 * 113.61709 * 181.52888 * 18 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 27 27 H 0.97000 * 119.99822 * 0.02562 * 15 14 12 28 28 H 1.09007 * 112.84508 * 50.33037 * 18 16 15 29 29 H 1.08998 * 113.61697 * 334.56596 * 19 18 16 30 30 H 1.09001 * 113.61635 * 105.47032 * 19 18 16 31 31 H 1.09005 * 113.53771 * 270.81065 * 20 19 18 32 32 H 1.08997 * 113.66802 * 139.92906 * 20 19 18 33 33 H 1.09004 * 113.61677 * 254.53309 * 21 18 16 34 34 H 1.09007 * 113.61386 * 25.34699 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 7 2.1743 -0.9101 -3.5984 16 6 1.8491 -0.4494 -4.8225 17 8 1.1522 0.5369 -4.9338 18 6 2.3515 -1.1598 -6.0530 19 6 3.7984 -0.7966 -6.4264 20 6 3.3354 -0.8005 -7.8946 21 6 1.9241 -0.4892 -7.3692 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.1494 0.5389 -2.5436 27 1 2.7320 -1.6988 -3.5094 28 1 2.1632 -2.2331 -6.0285 29 1 4.1083 0.1854 -6.0689 30 1 4.5194 -1.5800 -6.1929 31 1 3.4174 -1.7759 -8.3743 32 1 3.7663 0.0033 -8.4914 33 1 1.1341 -1.0247 -7.8957 34 1 1.7191 0.5768 -7.2696 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827216125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = -22.725994 kcal Electronic energy + Delta-G solvation = -17030.366269 eV Core-core repulsion = 14158.326444 eV Total energy + Delta-G solvation = -2872.039826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48439 -39.05107 -37.44048 -34.95489 -33.96592 -31.74495 -30.44328 -26.73000 -25.87446 -25.21026 -23.13833 -21.45803 -20.34368 -19.26342 -17.68934 -17.38338 -16.69933 -15.86410 -15.44112 -15.11499 -14.89665 -14.53096 -14.11559 -13.36336 -13.10180 -12.84529 -12.71657 -12.35917 -12.34057 -11.76713 -11.48707 -11.20068 -10.86565 -10.81875 -10.68643 -10.67307 -10.38922 -9.95563 -9.69494 -9.18931 -9.00433 -8.63906 -8.01311 -6.11133 -4.12911 2.18066 2.46365 3.21107 3.29174 3.34414 3.38626 4.17495 4.24172 4.32531 4.33315 4.52595 4.65643 4.98845 5.17977 5.27384 5.41105 5.51686 5.61171 5.62929 5.69282 5.81115 6.05511 6.14368 6.19928 6.33430 6.61852 6.99590 7.02928 7.06739 7.45381 7.94518 8.15065 8.45969 8.91627 9.06781 9.46424 11.01390 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.004852 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.426845 B = 5769.525497 C = 6096.595447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.059 0.941 4 C -0.510 4.510 5 H 0.095 0.905 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.266 1.266 12 C 0.530 3.470 13 O -0.530 6.530 14 N -0.543 5.543 15 N -0.520 5.520 16 C 0.517 3.483 17 O -0.548 6.548 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.115 4.115 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.426 0.574 27 H 0.429 0.571 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 1.202 -19.987 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 H 0.076 0.924 4 C -0.548 4.548 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.191 1.191 12 C 0.319 3.681 13 O -0.403 6.403 14 N -0.294 5.294 15 N -0.265 5.265 16 C 0.303 3.697 17 O -0.425 6.425 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.179 4.179 21 C -0.153 4.153 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.268 0.732 27 H 0.270 0.730 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.154 1.159 -19.735 19.770 hybrid contribution -0.662 0.724 0.351 1.042 sum -0.816 1.882 -19.384 19.493 Atomic orbital electron populations 1.22179 0.96892 1.01868 0.99702 1.19305 0.93506 0.97712 0.90944 0.92376 1.20872 1.32607 1.14326 0.86967 0.88715 1.24946 0.95725 0.96594 0.95652 1.69870 1.45145 1.40077 0.97927 0.86925 0.80745 0.83701 0.77297 1.20352 1.22152 1.19108 1.21808 0.79290 0.84846 0.82157 1.90597 1.37574 1.26329 1.85768 1.45686 1.55125 1.31382 0.97245 1.44966 1.52567 1.30456 0.98472 1.20747 0.80730 0.85278 0.82966 1.90690 1.38733 1.26780 1.86314 1.22763 0.98967 1.01389 0.92127 1.22909 0.94064 1.02861 0.96561 1.22860 0.96650 1.02319 0.96065 1.22810 0.97064 1.02258 0.93150 0.92081 0.94546 0.92878 0.92402 0.73246 0.72972 0.86501 0.89463 0.90299 0.89787 0.90867 0.90859 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.57 37.16 0.32 -2.72 16 2 C 0.01 0.20 2.23 -92.92 -0.21 -0.01 16 3 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 4 C -0.51 -14.40 8.96 -34.44 -0.31 -14.71 16 5 H 0.09 3.04 7.00 -52.49 -0.37 2.67 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 8 Si 0.88 20.96 24.37 -169.99 -4.14 16.82 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -5.88 6.53 56.52 0.37 -5.51 16 12 C 0.53 11.39 7.27 -10.99 -0.08 11.31 16 13 O -0.53 -13.00 15.30 5.56 0.09 -12.91 16 14 N -0.54 -9.53 6.15 31.22 0.19 -9.34 16 15 N -0.52 -7.77 6.26 31.22 0.20 -7.57 16 16 C 0.52 7.07 7.47 -10.98 -0.08 6.99 16 17 O -0.55 -9.20 15.75 5.56 0.09 -9.11 16 18 C -0.13 -1.22 4.14 -90.97 -0.38 -1.60 16 19 C -0.13 -1.02 7.64 -25.83 -0.20 -1.22 16 20 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 21 C -0.11 -1.00 7.40 -25.92 -0.19 -1.19 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.43 6.99 7.42 -182.59 -1.35 5.63 16 27 H 0.43 5.93 8.00 -182.59 -1.46 4.47 16 28 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.99 7.45 -51.92 -0.39 0.61 16 LS Contribution 282.66 15.07 4.26 4.26 Total: -1.00 -33.40 282.66 -6.62 -40.03 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.64 Total: 6.51 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.43 Total: -2.34 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 1.16 Total: -43.25 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.40 -6.62 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827216125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.299 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds