Wall clock time and date at job start Mon Mar 30 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 N 1.40107 * 119.99731 * 179.97438 * 14 12 2 16 16 C 1.34778 * 119.99731 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00059 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99951 * 180.02562 * 16 15 14 19 19 C 1.53778 * 113.61360 * 279.14048 * 18 16 15 20 20 C 1.53952 * 87.01832 * 220.04595 * 19 18 16 21 21 C 1.53771 * 113.61709 * 181.52888 * 18 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 27 27 H 0.97000 * 119.99822 * 0.02562 * 15 14 12 28 28 H 1.09007 * 112.84508 * 50.33037 * 18 16 15 29 29 H 1.08998 * 113.61697 * 334.56596 * 19 18 16 30 30 H 1.09001 * 113.61635 * 105.47032 * 19 18 16 31 31 H 1.09005 * 113.53771 * 270.81065 * 20 19 18 32 32 H 1.08997 * 113.66802 * 139.92906 * 20 19 18 33 33 H 1.09004 * 113.61677 * 254.53309 * 21 18 16 34 34 H 1.09007 * 113.61386 * 25.34699 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 7 2.1743 -0.9101 -3.5984 16 6 1.8491 -0.4494 -4.8225 17 8 1.1522 0.5369 -4.9338 18 6 2.3515 -1.1598 -6.0530 19 6 3.7984 -0.7966 -6.4264 20 6 3.3354 -0.8005 -7.8946 21 6 1.9241 -0.4892 -7.3692 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.1494 0.5389 -2.5436 27 1 2.7320 -1.6988 -3.5094 28 1 2.1632 -2.2331 -6.0285 29 1 4.1083 0.1854 -6.0689 30 1 4.5194 -1.5800 -6.1929 31 1 3.4174 -1.7759 -8.3743 32 1 3.7663 0.0033 -8.4914 33 1 1.1341 -1.0247 -7.8957 34 1 1.7191 0.5768 -7.2696 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827216125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:42 Heat of formation + Delta-G solvation = -48.497976 kcal Electronic energy + Delta-G solvation = -17031.483826 eV Core-core repulsion = 14158.326444 eV Total energy + Delta-G solvation = -2873.157383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64145 -40.49865 -38.42932 -36.37837 -35.88055 -33.65370 -31.96002 -27.63107 -27.14409 -26.52695 -24.83686 -22.62892 -21.71616 -20.18850 -19.10760 -18.81169 -18.46367 -17.17059 -16.79152 -16.63066 -16.15050 -15.86849 -15.50082 -15.11159 -14.67682 -14.11649 -13.88839 -13.58229 -13.39789 -13.10892 -12.91018 -12.60121 -12.40711 -12.18036 -12.17572 -11.49808 -11.43425 -11.32035 -11.27227 -11.13762 -10.79805 -10.63840 -9.42042 -8.28553 -6.37378 0.87119 1.28187 1.35545 1.40946 1.51589 1.76581 2.33492 3.04859 3.04954 3.46236 3.61957 3.72807 3.92046 4.00279 4.20198 4.35554 4.53191 4.66797 4.69716 4.80874 4.88040 4.94107 5.05207 5.12424 5.16904 5.37519 5.43864 5.51652 5.62463 5.77720 6.25047 6.56145 6.77281 6.88864 7.24528 7.41031 8.88479 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.004852 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.426845 B = 5769.525497 C = 6096.595447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 H 0.076 0.924 4 C -0.522 4.522 5 H 0.037 0.963 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.955 3.045 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.232 1.232 12 C 0.533 3.467 13 O -0.571 6.571 14 N -0.530 5.530 15 N -0.520 5.520 16 C 0.519 3.481 17 O -0.578 6.578 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.119 4.119 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.269 0.731 26 H 0.434 0.566 27 H 0.434 0.566 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 2.469 -22.414 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 H 0.093 0.907 4 C -0.560 4.560 5 H 0.055 0.945 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.780 3.220 9 H -0.186 1.186 10 H -0.226 1.226 11 H -0.155 1.155 12 C 0.322 3.678 13 O -0.447 6.447 14 N -0.279 5.279 15 N -0.267 5.267 16 C 0.307 3.693 17 O -0.456 6.456 18 C -0.150 4.150 19 C -0.165 4.165 20 C -0.165 4.165 21 C -0.157 4.157 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.278 0.722 27 H 0.276 0.724 28 H 0.161 0.839 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.319 2.445 -22.229 22.402 hybrid contribution -0.237 0.264 1.017 1.077 sum -1.555 2.710 -21.213 21.442 Atomic orbital electron populations 1.22085 0.94296 1.02095 1.01665 1.19229 0.95494 0.97718 0.89495 0.90664 1.21000 1.32067 1.13121 0.89854 0.94494 1.25938 0.97272 1.00488 0.94799 1.70051 1.47323 1.42623 0.98762 0.85777 0.78944 0.79198 0.78130 1.18571 1.22641 1.15541 1.21412 0.79004 0.84276 0.83147 1.90585 1.39534 1.28113 1.86469 1.45238 1.54085 1.31147 0.97463 1.45258 1.52992 1.30696 0.97730 1.21667 0.79592 0.84820 0.83215 1.90676 1.40069 1.28241 1.86663 1.23018 0.99867 1.02410 0.89748 1.22948 0.93419 1.02638 0.97485 1.22844 0.94713 1.03656 0.95277 1.22838 0.98826 1.01085 0.92976 0.92919 0.90179 0.93093 0.92247 0.72246 0.72367 0.83883 0.90881 0.88733 0.87694 0.90279 0.89625 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 8.57 71.98 0.62 -4.86 16 2 C 0.00 0.17 2.23 -12.29 -0.03 0.14 16 3 H 0.08 3.14 7.20 -2.39 -0.02 3.13 16 4 C -0.52 -30.39 8.96 25.60 0.23 -30.16 16 5 H 0.04 2.52 7.00 -2.91 -0.02 2.50 16 6 C 0.01 0.71 5.45 84.65 0.46 1.17 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.95 42.35 24.37 68.60 1.67 44.03 16 9 H -0.26 -10.81 6.87 99.48 0.68 -10.13 16 10 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.23 -8.99 6.53 99.48 0.65 -8.34 16 12 C 0.53 22.76 7.27 87.66 0.64 23.40 16 13 O -0.57 -28.75 15.30 -3.02 -0.05 -28.80 16 14 N -0.53 -17.81 6.15 -173.54 -1.07 -18.87 16 15 N -0.52 -14.83 6.26 -173.53 -1.09 -15.91 16 16 C 0.52 13.29 7.47 87.66 0.65 13.95 16 17 O -0.58 -18.52 15.75 -3.02 -0.05 -18.56 16 18 C -0.13 -2.09 4.14 -11.02 -0.05 -2.14 16 19 C -0.13 -1.74 7.64 31.18 0.24 -1.50 16 20 C -0.13 -1.34 8.09 31.18 0.25 -1.09 16 21 C -0.12 -1.79 7.40 31.12 0.23 -1.56 16 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.08 2.34 7.56 -2.39 -0.02 2.32 16 24 H 0.05 1.96 3.27 -2.38 -0.01 1.96 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.43 13.19 7.42 -213.32 -1.58 11.61 16 27 H 0.43 11.55 8.00 -213.32 -1.71 9.84 16 28 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.71 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.46 7.45 -2.38 -0.02 1.45 16 Total: -1.00 -75.99 282.66 0.73 -75.25 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -2.24 Total: 24.91 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 3.25 Total: -2.66 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -1.85 Total: -94.17 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.09 Total: -47.36 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.67 Total: 44.03 kcal Total: -75.99 0.73 -75.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827216125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.756 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds