Wall clock time and date at job start Mon Mar 30 2020 04:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.85509 * 2 1 4 4 C 1.54776 * 110.63428 * 123.62348 * 2 1 3 5 5 C 1.51722 * 102.78673 * 143.67035 * 4 2 1 6 6 N 1.31433 * 126.24563 * 164.67987 * 5 4 2 7 7 C 1.33811 * 119.99757 * 185.13857 * 6 5 4 8 8 O 1.21439 * 120.00130 * 354.75233 * 7 6 5 9 9 C 1.50697 * 119.99861 * 174.74909 * 7 6 5 10 10 C 1.52996 * 109.47229 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47365 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47458 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99898 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99895 * 179.97438 * 12 11 10 15 15 N 1.31503 * 120.00308 * 359.72951 * 14 12 11 16 16 Si 1.86801 * 119.99578 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47437 * 269.72787 * 16 14 12 18 18 H 1.48500 * 109.47319 * 29.72589 * 16 14 12 19 19 H 1.48498 * 109.47183 * 149.72929 * 16 14 12 20 20 N 1.34843 * 107.50841 * 344.40869 * 5 4 2 21 21 O 1.41464 * 111.66192 * 359.08903 * 20 5 4 22 22 H 1.09000 * 109.47048 * 181.97416 * 1 2 3 23 23 H 1.08992 * 109.47475 * 301.98362 * 1 2 3 24 24 H 1.09007 * 109.46722 * 61.97987 * 1 2 3 25 25 H 1.08993 * 110.87204 * 25.30336 * 4 2 1 26 26 H 1.09001 * 110.67240 * 261.93497 * 4 2 1 27 27 H 1.08994 * 109.47237 * 59.99792 * 9 7 6 28 28 H 1.09009 * 109.46843 * 300.00209 * 9 7 6 29 29 H 1.09003 * 109.47205 * 59.99936 * 10 9 7 30 30 H 1.08997 * 109.46875 * 300.00049 * 10 9 7 31 31 H 1.08994 * 109.47264 * 59.99485 * 11 10 9 32 32 H 1.09009 * 109.46679 * 299.99984 * 11 10 9 33 33 H 0.97006 * 120.00398 * 0.27099 * 15 14 12 34 34 H 0.97001 * 124.16958 * 179.08351 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0754 -0.8021 1.2061 5 6 3.3093 -1.4734 0.6327 6 7 4.2773 -2.0376 1.3198 7 6 5.3613 -2.5042 0.6892 8 8 5.4097 -2.4933 -0.5242 9 6 6.5221 -3.0432 1.4848 10 6 7.6231 -3.5080 0.5295 11 6 8.8014 -4.0558 1.3372 12 6 9.8856 -4.5142 0.3963 13 1 9.7482 -4.4235 -0.6711 14 6 11.0535 -5.0485 0.8982 15 7 11.2234 -5.1531 2.1980 16 14 12.3971 -5.6174 -0.2683 17 1 12.1866 -7.0482 -0.6058 18 1 12.3517 -4.8041 -1.5099 19 1 13.7211 -5.4522 0.3836 20 7 3.2286 -1.3909 -0.7108 21 8 2.0413 -0.7419 -1.1238 22 1 -0.3633 -1.0271 0.0354 23 1 -0.3634 0.5443 0.8716 24 1 -0.3633 0.4828 -0.9073 25 1 1.3506 -1.5454 1.5379 26 1 2.3449 -0.1327 2.0231 27 1 6.1875 -3.8848 2.0911 28 1 6.9122 -2.2597 2.1346 29 1 7.9577 -2.6660 -0.0765 30 1 7.2333 -4.2913 -0.1205 31 1 8.4666 -4.8978 1.9429 32 1 9.1914 -3.2727 1.9876 33 1 10.5256 -4.8581 2.8038 34 1 3.9017 -1.7341 -1.3192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847624167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:36 Heat of formation + Delta-G solvation = -21.533574 kcal Electronic energy + Delta-G solvation = -16517.072885 eV Core-core repulsion = 13645.084767 eV Total energy + Delta-G solvation = -2871.988119 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03565 -39.27908 -35.18035 -34.31003 -33.39074 -32.12930 -31.04059 -28.32662 -27.56761 -23.96950 -22.51146 -22.04208 -20.48546 -19.69074 -18.02907 -17.37737 -16.63719 -16.20041 -15.43076 -15.29856 -14.74651 -14.13078 -13.72606 -13.65672 -13.40165 -13.30771 -12.91839 -12.82612 -12.38495 -11.91343 -11.53310 -11.37103 -10.79921 -10.73455 -10.66600 -10.63073 -10.06065 -9.74650 -9.67233 -9.37104 -8.86678 -8.44495 -8.24081 -6.28226 -3.95974 1.00298 1.79792 3.26709 3.41623 3.49171 3.53294 3.59433 3.69274 3.93474 4.27896 4.47655 4.60023 4.66727 4.93927 5.00245 5.23189 5.28466 5.49080 5.50361 5.63142 5.80031 5.95540 6.19848 6.35897 6.67126 6.83276 6.95136 7.08501 7.43845 7.53211 7.64105 8.32849 8.38975 8.56766 8.98136 9.75866 11.12818 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.077838 B = 0.003556 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.635057 B = 7871.525311 C = 8172.853060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 H 0.095 0.905 4 C -0.116 4.116 5 C 0.453 3.547 6 N -0.621 5.621 7 C 0.493 3.507 8 O -0.558 6.558 9 C -0.119 4.119 10 C -0.092 4.092 11 C 0.007 3.993 12 C -0.599 4.599 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 1.072 2.928 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.284 1.284 20 N -0.548 5.548 21 O -0.158 6.158 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.008 0.992 32 H 0.007 0.993 33 H 0.269 0.731 34 H 0.456 0.544 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.379 11.801 -1.500 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 H 0.113 0.887 4 C -0.155 4.155 5 C 0.184 3.816 6 N -0.379 5.379 7 C 0.284 3.716 8 O -0.437 6.437 9 C -0.158 4.158 10 C -0.130 4.130 11 C -0.030 4.030 12 C -0.638 4.638 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.553 5.553 16 Si 0.900 3.100 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.210 1.210 20 N -0.244 5.244 21 O -0.163 6.163 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges -21.759 10.967 -1.869 24.438 hybrid contribution -1.304 0.670 -0.751 1.647 sum -23.063 11.637 -2.620 25.965 Atomic orbital electron populations 1.21898 0.90844 1.03986 1.03838 1.23683 0.96690 0.96016 0.84297 0.88713 1.22428 0.93193 1.00426 0.99498 1.23937 0.92545 0.84242 0.80849 1.69725 1.04541 1.27870 1.35715 1.22398 0.87106 0.75160 0.86960 1.90311 1.82505 1.53068 1.17773 1.21532 0.92933 1.01866 0.99453 1.21361 0.94302 1.00197 0.97144 1.19252 0.92774 0.95241 0.95706 1.22112 1.02872 1.44760 0.94035 0.93291 1.25858 0.99579 0.94897 0.98734 1.70744 1.36770 1.45388 1.02412 0.83509 0.75718 0.76264 0.74470 1.21493 1.21518 1.21022 1.48693 1.14521 1.54045 1.07101 1.90979 1.29078 1.64922 1.31297 0.91015 0.89636 0.90864 0.86024 0.85808 0.88884 0.88952 0.92826 0.92788 0.97418 0.97427 0.92096 0.68201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.59 37.16 0.36 -0.18 16 2 C 0.05 0.32 4.40 -25.80 -0.11 0.21 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.78 6.59 -26.44 -0.17 -0.96 16 5 C 0.45 5.57 7.95 -154.31 -1.23 4.35 16 6 N -0.62 -9.58 10.47 -9.26 -0.10 -9.68 16 7 C 0.49 9.03 7.72 -11.42 -0.09 8.94 16 8 O -0.56 -11.09 13.26 5.42 0.07 -11.02 16 9 C -0.12 -2.26 5.78 -27.89 -0.16 -2.42 16 10 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C 0.01 0.20 4.28 -27.89 -0.12 0.08 16 12 C -0.60 -18.16 9.11 -34.44 -0.31 -18.47 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 15 N -0.92 -29.11 13.65 55.43 0.76 -28.35 16 16 Si 1.07 26.50 29.90 -169.99 -5.08 21.42 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 N -0.55 -6.96 6.98 33.05 0.23 -6.73 16 21 O -0.16 -1.63 12.20 -11.40 -0.14 -1.77 16 22 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 23 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 24 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.12 0.62 7.88 -51.93 -0.41 0.21 16 26 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 31 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 32 H 0.01 0.21 8.00 -51.92 -0.42 -0.21 16 33 H 0.27 8.46 7.22 -40.82 -0.29 8.17 16 34 H 0.46 6.65 6.06 -40.82 -0.25 6.40 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -35.54 291.19 -6.71 -42.25 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.78 Total: -0.10 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.06 Total: -10.42 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.89 Total: -44.76 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.07 Total: -12.78 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.08 Total: 21.42 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.54 -6.71 -42.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847624167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.720 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds