Wall clock time and date at job start Mon Mar 30 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46649 * 269.99559 * 3 2 1 5 5 H 1.48496 * 109.47287 * 29.99745 * 3 2 1 6 6 H 1.48504 * 109.47109 * 149.99917 * 3 2 1 7 7 C 1.37871 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00396 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00006 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00152 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00038 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46918 * 300.00226 * 14 13 11 16 16 C 1.52993 * 109.47360 * 299.99605 * 15 14 13 17 17 C 1.52993 * 109.47489 * 180.02562 * 16 15 14 18 18 N 1.46906 * 109.47378 * 175.00066 * 17 16 15 19 19 C 1.53009 * 109.47089 * 59.99953 * 16 15 14 20 20 C 1.52993 * 109.47000 * 300.00354 * 19 16 15 21 21 H 0.97004 * 119.99762 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46815 * 60.00524 * 9 7 2 23 23 H 1.09001 * 109.46970 * 300.00798 * 9 7 2 24 24 H 0.96998 * 120.00212 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.47083 * 300.00160 * 13 11 10 26 26 H 1.08994 * 109.47199 * 180.02562 * 14 13 11 27 27 H 1.09000 * 109.47048 * 60.00016 * 14 13 11 28 28 H 1.09000 * 109.47173 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.47265 * 59.99943 * 15 14 13 30 30 H 1.09003 * 109.47607 * 300.00822 * 16 15 14 31 31 H 1.09004 * 109.46862 * 55.00169 * 17 16 15 32 32 H 1.09000 * 109.47250 * 295.00193 * 17 16 15 33 33 H 1.00902 * 110.99567 * 179.97438 * 18 17 16 34 34 H 1.00901 * 111.00013 * 303.95621 * 18 17 16 35 35 H 1.09007 * 109.46734 * 60.00486 * 19 16 15 36 36 H 1.09000 * 109.47100 * 179.97438 * 19 16 15 37 37 H 1.08999 * 109.47626 * 299.99357 * 20 19 16 38 38 H 1.09009 * 109.46953 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8217 0.0001 12 8 6.1130 -1.8998 0.0006 13 6 5.8271 -4.2424 -0.0003 14 6 7.3571 -4.2425 0.0005 15 6 7.8678 -3.5206 -1.2481 16 6 7.3586 -4.2411 -2.4980 17 6 7.8697 -3.5196 -3.7465 18 7 7.4817 -4.2777 -4.9436 19 6 5.8285 -4.2412 -2.4988 20 6 5.3178 -4.9630 -1.2503 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 3.3695 -3.3126 0.0001 25 1 5.4636 -4.7566 0.8894 26 1 7.7204 -5.2701 -0.0003 27 1 7.7200 -3.7292 0.8909 28 1 8.9578 -3.5202 -1.2473 29 1 7.5045 -2.4930 -1.2477 30 1 7.7218 -5.2689 -2.4984 31 1 8.9561 -3.4418 -3.7020 32 1 7.4355 -2.5209 -3.7924 33 1 7.8077 -3.8210 -5.7822 34 1 7.8181 -5.2277 -4.8947 35 1 5.4652 -3.2134 -2.4985 36 1 5.4656 -4.7541 -3.3895 37 1 5.6811 -5.9907 -1.2506 38 1 4.2278 -4.9626 -1.2507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086478538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:47 Heat of formation + Delta-G solvation = -67.267503 kcal Electronic energy + Delta-G solvation = -17904.629154 eV Core-core repulsion = 15166.490958 eV Total energy + Delta-G solvation = -2738.138196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07507 -37.39653 -34.52388 -34.24105 -32.37622 -30.71224 -30.28828 -27.84867 -24.87324 -22.66077 -22.47602 -21.14618 -20.25985 -19.12388 -16.91703 -16.22422 -15.73911 -15.34499 -15.09332 -14.73470 -14.32990 -14.11003 -13.86094 -13.55621 -13.10837 -12.50092 -12.25087 -12.24740 -11.99577 -11.86306 -11.62424 -11.47392 -10.97896 -10.85147 -10.71269 -10.39696 -10.00428 -9.94174 -9.89623 -9.46040 -8.88328 -8.74748 -8.73986 -8.05804 -6.19123 -4.20848 3.27360 3.33249 3.34643 3.43194 4.07456 4.35452 4.45659 4.78771 4.84715 4.98209 5.14249 5.16359 5.34344 5.43007 5.55059 5.56758 5.66006 5.69267 5.77227 5.87874 5.97266 6.07144 6.20913 6.27217 6.40932 6.49709 6.55700 6.75566 6.87632 7.02104 7.11233 7.30694 7.31582 7.45039 8.18269 8.58201 8.78908 9.02532 9.41674 10.92966 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.005997 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.493291 B = 4667.971968 C = 4869.512830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.705 5.705 11 C 0.508 3.492 12 O -0.556 6.556 13 C -0.112 4.112 14 C -0.091 4.091 15 C -0.129 4.129 16 C -0.081 4.081 17 C 0.065 3.935 18 N -0.849 5.849 19 C -0.108 4.108 20 C -0.110 4.110 21 H 0.267 0.733 22 H 0.023 0.977 23 H 0.019 0.981 24 H 0.395 0.605 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.338 0.662 34 H 0.336 0.664 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.686 -10.940 -4.695 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.353 5.353 11 C 0.294 3.706 12 O -0.436 6.436 13 C -0.133 4.133 14 C -0.129 4.129 15 C -0.167 4.167 16 C -0.100 4.100 17 C -0.066 4.066 18 N -0.378 5.378 19 C -0.146 4.146 20 C -0.148 4.148 21 H 0.077 0.923 22 H 0.041 0.959 23 H 0.037 0.963 24 H 0.229 0.771 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.296 -9.981 -4.453 17.995 hybrid contribution 0.970 0.442 -0.137 1.075 sum 15.266 -9.539 -4.590 18.578 Atomic orbital electron populations 1.69886 1.06202 1.27354 1.49622 1.24795 0.94774 0.99132 0.93925 0.86824 0.80573 0.83313 0.79013 1.19886 1.20938 1.18547 1.21108 0.88613 0.95173 1.53064 0.90290 1.19458 0.95167 0.78964 0.96590 1.46202 1.05904 1.10793 1.72430 1.20447 0.82923 0.90745 0.76510 1.90551 1.55280 1.46556 1.51260 1.21384 0.97524 0.94419 0.99996 1.21227 0.92994 0.99776 0.98925 1.21820 0.99233 1.02636 0.93001 1.21142 0.96391 0.98680 0.93751 1.21865 0.96731 0.98062 0.89943 1.58680 1.68513 1.06185 1.04393 1.21496 0.94412 1.01372 0.97308 1.21540 1.00758 0.98847 0.93626 0.92313 0.95876 0.96311 0.77121 0.89195 0.92195 0.91568 0.93012 0.88469 0.92100 0.95943 0.90865 0.84967 0.85174 0.91784 0.90875 0.91476 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 10 N -0.71 -14.44 5.44 -61.47 -0.33 -14.77 16 11 C 0.51 9.61 5.64 -10.99 -0.06 9.55 16 12 O -0.56 -12.28 13.66 5.56 0.08 -12.20 16 13 C -0.11 -1.56 3.01 -91.77 -0.28 -1.84 16 14 C -0.09 -1.18 5.09 -26.73 -0.14 -1.32 16 15 C -0.13 -1.74 4.91 -26.73 -0.13 -1.87 16 16 C -0.08 -0.97 2.33 -90.62 -0.21 -1.18 16 17 C 0.06 0.74 6.18 -3.82 -0.02 0.72 16 18 N -0.85 -8.42 9.08 -10.37 -0.09 -8.51 16 19 C -0.11 -1.48 4.87 -26.73 -0.13 -1.61 16 20 C -0.11 -1.37 5.36 -26.73 -0.14 -1.51 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 23 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 24 H 0.40 7.26 7.74 -40.82 -0.32 6.94 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.65 5.51 -51.93 -0.29 1.37 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.34 2.82 9.08 -39.29 -0.36 2.46 16 34 H 0.34 2.79 8.99 -39.29 -0.35 2.43 16 35 H 0.06 1.08 7.22 -51.93 -0.37 0.70 16 36 H 0.07 0.98 7.75 -51.93 -0.40 0.57 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.86 7.57 -51.92 -0.39 0.47 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -31.32 297.41 -7.55 -38.86 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.21 Total: 7.94 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.57 Total: -6.85 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.34 Total: -49.27 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.32 -7.55 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086478538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.404 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds