Wall clock time and date at job start Mon Mar 30 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46649 * 269.99559 * 3 2 1 5 5 H 1.48496 * 109.47287 * 29.99745 * 3 2 1 6 6 H 1.48504 * 109.47109 * 149.99917 * 3 2 1 7 7 C 1.37871 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00396 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00006 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00152 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00038 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46918 * 300.00226 * 14 13 11 16 16 C 1.52993 * 109.47360 * 299.99605 * 15 14 13 17 17 C 1.52993 * 109.47489 * 180.02562 * 16 15 14 18 18 N 1.46906 * 109.47378 * 175.00066 * 17 16 15 19 19 C 1.53009 * 109.47089 * 59.99953 * 16 15 14 20 20 C 1.52993 * 109.47000 * 300.00354 * 19 16 15 21 21 H 0.97004 * 119.99762 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46815 * 60.00524 * 9 7 2 23 23 H 1.09001 * 109.46970 * 300.00798 * 9 7 2 24 24 H 0.96998 * 120.00212 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.47083 * 300.00160 * 13 11 10 26 26 H 1.08994 * 109.47199 * 180.02562 * 14 13 11 27 27 H 1.09000 * 109.47048 * 60.00016 * 14 13 11 28 28 H 1.09000 * 109.47173 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.47265 * 59.99943 * 15 14 13 30 30 H 1.09003 * 109.47607 * 300.00822 * 16 15 14 31 31 H 1.09004 * 109.46862 * 55.00169 * 17 16 15 32 32 H 1.09000 * 109.47250 * 295.00193 * 17 16 15 33 33 H 1.00902 * 110.99567 * 179.97438 * 18 17 16 34 34 H 1.00901 * 111.00013 * 303.95621 * 18 17 16 35 35 H 1.09007 * 109.46734 * 60.00486 * 19 16 15 36 36 H 1.09000 * 109.47100 * 179.97438 * 19 16 15 37 37 H 1.08999 * 109.47626 * 299.99357 * 20 19 16 38 38 H 1.09009 * 109.46953 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8217 0.0001 12 8 6.1130 -1.8998 0.0006 13 6 5.8271 -4.2424 -0.0003 14 6 7.3571 -4.2425 0.0005 15 6 7.8678 -3.5206 -1.2481 16 6 7.3586 -4.2411 -2.4980 17 6 7.8697 -3.5196 -3.7465 18 7 7.4817 -4.2777 -4.9436 19 6 5.8285 -4.2412 -2.4988 20 6 5.3178 -4.9630 -1.2503 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 3.3695 -3.3126 0.0001 25 1 5.4636 -4.7566 0.8894 26 1 7.7204 -5.2701 -0.0003 27 1 7.7200 -3.7292 0.8909 28 1 8.9578 -3.5202 -1.2473 29 1 7.5045 -2.4930 -1.2477 30 1 7.7218 -5.2689 -2.4984 31 1 8.9561 -3.4418 -3.7020 32 1 7.4355 -2.5209 -3.7924 33 1 7.8077 -3.8210 -5.7822 34 1 7.8181 -5.2277 -4.8947 35 1 5.4652 -3.2134 -2.4985 36 1 5.4656 -4.7541 -3.3895 37 1 5.6811 -5.9907 -1.2506 38 1 4.2278 -4.9626 -1.2507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086478538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:47 Heat of formation + Delta-G solvation = -91.103275 kcal Electronic energy + Delta-G solvation = -17905.662751 eV Core-core repulsion = 15166.490958 eV Total energy + Delta-G solvation = -2739.171793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.40952 -38.67242 -36.17019 -35.43547 -34.42082 -31.86136 -31.32500 -29.75028 -26.02809 -24.32836 -23.54947 -22.60963 -21.41165 -20.62538 -18.82470 -17.47800 -17.18892 -16.83439 -16.50019 -15.89161 -15.63023 -15.37721 -15.18145 -14.81222 -14.78139 -14.29420 -13.99416 -13.49155 -13.09250 -13.00330 -12.86650 -12.75930 -12.69837 -12.54092 -11.95658 -11.86486 -11.66521 -11.50689 -11.00776 -10.93111 -10.92322 -10.38814 -9.83504 -9.53748 -8.41388 -6.47859 1.29887 1.31865 1.44611 1.82673 2.26108 2.55685 2.93921 3.61443 3.72459 3.85428 3.93426 4.02077 4.34993 4.42148 4.44128 4.55820 4.66841 4.68461 4.76139 4.80719 4.87652 4.96870 5.02632 5.11358 5.20105 5.23755 5.27117 5.39220 5.43489 5.49364 5.54881 5.76685 6.09381 6.25890 6.53279 6.66223 6.90449 7.15591 7.49216 8.73518 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.005997 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.493291 B = 4667.971968 C = 4869.512830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.234 3.766 10 N -0.708 5.708 11 C 0.504 3.496 12 O -0.590 6.590 13 C -0.104 4.104 14 C -0.090 4.090 15 C -0.129 4.129 16 C -0.074 4.074 17 C 0.067 3.933 18 N -0.854 5.854 19 C -0.106 4.106 20 C -0.106 4.106 21 H 0.272 0.728 22 H 0.010 0.990 23 H 0.005 0.995 24 H 0.405 0.595 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.347 0.653 34 H 0.349 0.651 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 -12.732 -4.834 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.110 3.890 10 N -0.358 5.358 11 C 0.292 3.708 12 O -0.472 6.472 13 C -0.125 4.125 14 C -0.128 4.128 15 C -0.167 4.167 16 C -0.092 4.092 17 C -0.064 4.064 18 N -0.386 5.386 19 C -0.144 4.144 20 C -0.143 4.143 21 H 0.082 0.918 22 H 0.027 0.973 23 H 0.023 0.977 24 H 0.241 0.759 25 H 0.134 0.866 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.966 -11.807 -4.599 20.383 hybrid contribution 0.454 0.956 -0.126 1.066 sum 16.420 -10.851 -4.725 20.241 Atomic orbital electron populations 1.69983 1.07614 1.28569 1.50777 1.25583 0.95533 1.02570 0.93622 0.85879 0.79247 0.79524 0.79362 1.19167 1.19563 1.18671 1.21299 0.89994 0.94545 1.52468 0.92310 1.19022 0.93313 0.81492 0.95175 1.46089 1.07137 1.09259 1.73272 1.21459 0.81693 0.92912 0.74706 1.90548 1.55886 1.48417 1.52300 1.21470 0.98387 0.90620 1.01977 1.21287 0.91876 1.01696 0.97938 1.21754 1.00143 1.00516 0.94268 1.21098 0.95053 0.99917 0.93159 1.21742 0.97213 0.96824 0.90580 1.58614 1.68855 1.06905 1.04188 1.21455 0.95721 0.98897 0.98296 1.21576 1.00684 1.00238 0.91852 0.91844 0.97252 0.97706 0.75927 0.86607 0.88353 0.92762 0.91475 0.92720 0.89296 0.94665 0.93818 0.83997 0.83746 0.96162 0.90533 0.87751 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 45.22 27.47 68.60 1.88 47.10 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -12.63 6.54 99.48 0.65 -11.98 16 7 C -0.55 -30.87 9.83 25.60 0.25 -30.62 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.89 4.50 85.64 0.39 12.27 16 10 N -0.71 -29.30 5.44 -466.79 -2.54 -31.84 16 11 C 0.50 19.01 5.64 87.65 0.49 19.50 16 12 O -0.59 -26.57 13.66 -3.03 -0.04 -26.61 16 13 C -0.10 -2.64 3.01 -11.54 -0.03 -2.68 16 14 C -0.09 -2.07 5.09 30.60 0.16 -1.92 16 15 C -0.13 -3.27 4.91 30.59 0.15 -3.12 16 16 C -0.07 -1.61 2.33 -10.80 -0.03 -1.63 16 17 C 0.07 1.46 6.18 86.30 0.53 1.99 16 18 N -0.85 -15.39 9.08 -186.71 -1.70 -17.08 16 19 C -0.11 -2.75 4.87 30.59 0.15 -2.60 16 20 C -0.11 -2.33 5.36 30.59 0.16 -2.17 16 21 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 22 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 23 H 0.01 0.27 7.57 -2.39 -0.02 0.25 16 24 H 0.41 14.92 7.74 -92.71 -0.72 14.20 16 25 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.89 5.51 -2.39 -0.01 1.88 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.35 5.26 9.08 -89.69 -0.81 4.45 16 34 H 0.35 4.77 8.99 -89.69 -0.81 3.97 16 35 H 0.02 0.68 7.22 -2.38 -0.02 0.67 16 36 H 0.08 1.91 7.75 -2.39 -0.02 1.89 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.50 7.57 -2.38 -0.02 1.48 16 Total: -1.00 -69.26 297.41 -0.73 -70.00 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -1.32 Total: 23.51 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 2.69 Total: -8.93 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.94 Total: -105.06 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -69.26 -0.73 -70.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086478538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.108 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds