Wall clock time and date at job start Mon Mar 30 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47104 * 300.00302 * 3 2 1 5 5 N 1.46905 * 109.46946 * 59.99846 * 3 2 1 6 6 C 1.50696 * 109.47431 * 179.97438 * 3 2 1 7 7 O 1.21278 * 119.99944 * 23.90509 * 6 3 2 8 8 N 1.34771 * 120.00201 * 203.90865 * 6 3 2 9 9 C 1.46501 * 120.00094 * 185.00756 * 8 6 3 10 10 C 1.52996 * 109.47309 * 184.79499 * 9 8 6 11 11 C 1.50703 * 115.55448 * 297.25651 * 10 9 8 12 12 H 1.07996 * 119.99807 * 95.17025 * 11 10 9 13 13 C 1.37879 * 120.00083 * 274.90560 * 11 10 9 14 14 N 1.31510 * 119.99676 * 355.40341 * 13 11 10 15 15 Si 1.86797 * 120.00203 * 175.40228 * 13 11 10 16 16 H 1.48503 * 109.46793 * 59.99923 * 15 13 11 17 17 H 1.48499 * 109.47379 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47194 * 299.99930 * 15 13 11 19 19 C 1.52998 * 117.50085 * 82.92636 * 10 9 8 20 20 C 1.53002 * 117.50160 * 151.58649 * 10 9 8 21 21 H 1.09000 * 109.47071 * 60.00126 * 1 2 3 22 22 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47295 * 299.99976 * 1 2 3 24 24 H 1.09002 * 109.47295 * 240.00024 * 2 1 3 25 25 H 1.09000 * 109.47071 * 119.99874 * 2 1 3 26 26 H 1.09002 * 109.46817 * 299.99574 * 4 3 2 27 27 H 1.09000 * 109.47278 * 59.99617 * 4 3 2 28 28 H 1.08998 * 109.46994 * 180.02562 * 4 3 2 29 29 H 1.00895 * 111.00005 * 296.04771 * 5 3 2 30 30 H 1.00892 * 111.00041 * 60.00479 * 5 3 2 31 31 H 0.97001 * 120.00166 * 5.00485 * 8 6 3 32 32 H 1.09005 * 109.47127 * 64.79679 * 9 8 6 33 33 H 1.08998 * 109.47426 * 304.79895 * 9 8 6 34 34 H 0.97002 * 120.00095 * 184.99791 * 14 13 11 35 35 H 1.08998 * 117.50272 * 215.00468 * 19 10 9 36 36 H 1.09005 * 117.49645 * 0.02562 * 19 10 9 37 37 H 1.08997 * 117.49498 * 359.97438 * 20 10 9 38 38 H 1.08995 * 117.50518 * 144.97645 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 7 1.5503 2.1350 1.1995 6 6 3.5470 1.4425 0.0006 7 8 4.1536 0.4823 -0.4246 8 7 4.2207 2.5096 0.4738 9 6 5.6815 2.5567 0.3741 10 6 6.2013 3.8071 1.0863 11 6 5.7479 5.1217 0.5055 12 1 4.8849 5.6245 0.9163 13 6 6.4381 5.6853 -0.5467 14 7 7.5433 5.1228 -0.9845 15 14 5.8034 7.2475 -1.3503 16 1 5.7406 8.3337 -0.3396 17 1 6.7188 7.6459 -2.4497 18 1 4.4458 7.0046 -1.9009 19 6 6.3854 3.7310 2.6032 20 6 7.6087 3.7465 1.6833 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 1.6499 -2.1392 27 1 0.4400 2.1638 -1.2492 28 1 1.8937 3.1913 -1.2494 29 1 0.5438 2.2051 1.1909 30 1 1.8738 1.6775 2.0385 31 1 3.7383 3.2465 0.8803 32 1 5.9733 2.5888 -0.6757 33 1 6.1065 1.6688 0.8423 34 1 8.0677 5.5570 -1.6754 35 1 6.1786 4.6317 3.1811 36 1 6.1366 2.7900 3.0938 37 1 8.1642 2.8157 1.5690 38 1 8.2068 4.6573 1.6556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404117857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:57 Heat of formation + Delta-G solvation = -49.545961 kcal Electronic energy + Delta-G solvation = -17939.918948 eV Core-core repulsion = 15202.549215 eV Total energy + Delta-G solvation = -2737.369732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11579 -38.66971 -37.47267 -34.92577 -33.94465 -31.70575 -29.93831 -28.23555 -27.22681 -25.77577 -22.99287 -22.36219 -21.28534 -20.06157 -18.41735 -17.81051 -17.09742 -16.67503 -16.43162 -15.93413 -15.73693 -15.17983 -15.08304 -14.90515 -14.35863 -13.84927 -13.52094 -13.38468 -13.06964 -12.92204 -12.84438 -12.78234 -12.57903 -12.37664 -12.16586 -12.02332 -11.77619 -11.40934 -10.93808 -10.79369 -10.42578 -10.03771 -9.78690 -9.69056 -8.07909 -6.22056 1.44209 1.46022 1.52338 1.69554 2.39716 2.46039 3.19802 3.42755 3.50520 3.77957 3.93160 4.02048 4.25381 4.39805 4.50445 4.54301 4.64763 4.68720 4.73195 4.81749 4.89879 4.99650 5.03633 5.07092 5.12535 5.26982 5.27960 5.41512 5.55406 5.63263 5.73184 5.79341 6.05749 6.38438 6.59331 6.83415 6.88630 7.42414 7.47714 8.99050 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.007078 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.875897 B = 3955.100496 C = 4490.000446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.114 3.886 4 C -0.137 4.137 5 N -0.831 5.831 6 C 0.506 3.494 7 O -0.603 6.603 8 N -0.684 5.684 9 C 0.176 3.824 10 C 0.003 3.997 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.271 1.271 19 C -0.177 4.177 20 C -0.154 4.154 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.363 0.637 30 H 0.349 0.651 31 H 0.416 0.584 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 -5.375 3.875 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.018 3.982 4 C -0.195 4.195 5 N -0.366 5.366 6 C 0.292 3.708 7 O -0.485 6.485 8 N -0.332 5.332 9 C 0.051 3.949 10 C 0.003 3.997 11 C -0.540 4.540 12 H 0.081 0.919 13 C -0.177 4.177 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.196 1.196 19 C -0.214 4.214 20 C -0.192 4.192 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.180 0.820 30 H 0.163 0.837 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.619 -5.385 3.123 14.974 hybrid contribution -0.048 0.174 -0.360 0.403 sum -13.667 -5.211 2.763 14.885 Atomic orbital electron populations 1.21840 0.92562 1.02999 1.03078 1.22035 0.98072 0.94957 1.02431 1.20825 0.88483 0.94634 0.94260 1.21839 1.03216 1.00039 0.94427 1.58761 1.18019 1.57029 1.02794 1.21233 0.91103 0.81724 0.76756 1.90620 1.71413 1.36274 1.50187 1.45865 1.07199 1.21288 1.58865 1.20573 0.80080 0.95975 0.98250 1.19066 0.96744 0.93206 0.90731 1.20614 1.13490 1.04535 1.15338 0.91907 1.25709 0.95073 0.99990 0.96886 1.70113 1.15253 1.39637 1.29697 0.85743 0.78273 0.80254 0.78160 1.19382 1.21731 1.19579 1.22988 1.03370 1.01267 0.93744 1.22379 0.91599 0.99822 1.05408 0.91240 0.91565 0.91130 0.92479 0.92529 0.92749 0.88080 0.92506 0.81977 0.83697 0.74655 0.95834 0.94689 0.93236 0.89630 0.89556 0.91425 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.22 71.98 0.66 -1.52 16 2 C -0.13 -3.13 4.66 30.59 0.14 -2.99 16 3 C 0.11 3.00 0.90 2.78 0.00 3.00 16 4 C -0.14 -3.39 8.36 71.98 0.60 -2.79 16 5 N -0.83 -17.09 7.98 -154.52 -1.23 -18.32 16 6 C 0.51 19.22 6.67 87.66 0.58 19.80 16 7 O -0.60 -27.61 16.06 -3.02 -0.05 -27.65 16 8 N -0.68 -27.45 5.39 -463.07 -2.50 -29.95 16 9 C 0.18 8.34 5.53 86.38 0.48 8.82 16 10 C 0.00 0.16 1.51 -52.93 -0.08 0.08 16 11 C -0.50 -26.08 8.48 25.60 0.22 -25.86 16 12 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 13 C 0.02 1.28 5.43 84.66 0.46 1.74 16 14 N -0.91 -52.01 12.65 21.45 0.27 -51.74 16 15 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 C -0.18 -7.27 9.96 30.62 0.30 -6.97 16 20 C -0.15 -7.23 9.15 30.62 0.28 -6.95 16 21 H 0.07 0.93 6.43 -2.39 -0.02 0.92 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.07 0.80 6.76 -2.39 -0.02 0.78 16 24 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 1.75 6.43 -2.39 -0.02 1.74 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.36 5.31 7.31 -89.70 -0.66 4.65 16 30 H 0.35 6.82 8.99 -89.70 -0.81 6.02 16 31 H 0.42 15.78 7.57 -92.71 -0.70 15.07 16 32 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 35 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -63.81 311.66 1.08 -62.73 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -1.10 Total: 33.96 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 3.66 Total: -13.63 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.46 Total: -100.01 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.81 1.08 -62.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404117857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.186 kcal (2) G-P(sol) polarization free energy of solvation -63.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds