Wall clock time and date at job start Mon Mar 30 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47499 * 2 1 4 4 N 1.46502 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99936 * 84.38846 * 4 3 2 6 6 H 1.07996 * 119.99902 * 184.36925 * 5 4 3 7 7 C 1.38808 * 119.99804 * 4.37028 * 5 4 3 8 8 N 1.31619 * 120.00562 * 333.96307 * 7 5 4 9 9 Si 1.86808 * 119.99835 * 154.23882 * 7 5 4 10 10 H 1.48499 * 109.47106 * 264.72765 * 9 7 5 11 11 H 1.48495 * 109.46849 * 24.72372 * 9 7 5 12 12 H 1.48500 * 109.47231 * 144.72647 * 9 7 5 13 13 C 1.46494 * 119.99925 * 264.38529 * 4 3 2 14 14 H 1.09008 * 109.47035 * 180.02562 * 13 4 3 15 15 C 1.53001 * 109.47068 * 60.00139 * 13 4 3 16 16 C 1.50703 * 109.47565 * 300.00012 * 13 4 3 17 17 O 1.21283 * 119.99655 * 0.02562 * 16 13 4 18 18 N 1.34768 * 120.00231 * 179.97438 * 16 13 4 19 19 C 1.46500 * 120.00088 * 179.97438 * 18 16 13 20 20 C 1.53002 * 117.49946 * 223.75056 * 19 18 16 21 21 C 1.52998 * 117.49918 * 155.08897 * 19 18 16 22 22 H 1.09005 * 109.46451 * 60.00020 * 1 2 3 23 23 H 1.08991 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46626 * 300.00511 * 1 2 3 25 25 H 1.09007 * 109.47080 * 240.00155 * 2 1 3 26 26 H 1.09001 * 109.47064 * 120.00373 * 2 1 3 27 27 H 1.08998 * 109.46936 * 59.99730 * 3 2 1 28 28 H 1.09001 * 109.47267 * 300.00248 * 3 2 1 29 29 H 0.96995 * 120.00588 * 180.27554 * 8 7 5 30 30 H 1.09004 * 109.47098 * 179.97438 * 15 13 4 31 31 H 1.08998 * 109.47197 * 299.99802 * 15 13 4 32 32 H 1.08998 * 109.46884 * 60.00355 * 15 13 4 33 33 H 0.97000 * 120.00174 * 0.02562 * 18 16 13 34 34 H 1.09005 * 115.54894 * 9.41755 * 19 18 16 35 35 H 1.08993 * 117.50063 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.50015 * 145.02342 * 20 19 18 37 37 H 1.09009 * 117.49754 * 214.97785 * 21 19 18 38 38 H 1.09000 * 117.50222 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1903 1.3262 -1.1793 6 1 5.2679 1.2551 -1.1732 7 6 3.4997 1.2998 -2.3832 8 7 2.2534 0.8781 -2.4179 9 14 4.3418 1.8557 -3.9553 10 1 4.0164 3.2814 -4.2137 11 1 5.8116 1.7019 -3.8105 12 1 3.8667 1.0257 -5.0914 13 6 4.2370 1.5666 1.2635 14 1 5.3089 1.5475 1.0657 15 6 3.8670 0.4020 2.1842 16 6 3.8728 2.8686 1.9293 17 8 3.0795 3.6186 1.4011 18 7 4.4278 3.1990 3.1121 19 6 4.0741 4.4650 3.7591 20 6 5.2110 5.2906 4.3648 21 6 4.2313 4.5499 5.2786 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.7722 0.8559 -3.2598 30 1 4.4119 0.4942 3.1237 31 1 2.7953 0.4215 2.3820 32 1 4.1306 -0.5397 1.7027 33 1 5.0620 2.5990 3.5348 34 1 3.2432 5.0074 3.3079 35 1 6.2219 4.8916 4.2824 36 1 5.1278 6.3761 4.3127 37 1 3.5040 5.1486 5.8271 38 1 4.5975 3.6637 5.7970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:56 Heat of formation + Delta-G solvation = 17.615713 kcal Electronic energy + Delta-G solvation = -18131.023533 eV Core-core repulsion = 15396.566150 eV Total energy + Delta-G solvation = -2734.457384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.37711 -37.11374 -35.71484 -32.89352 -31.76657 -31.66299 -28.78072 -25.44871 -24.31390 -22.63145 -22.41610 -20.95146 -20.06515 -19.37155 -16.97020 -16.24313 -16.19492 -15.12092 -14.39110 -14.28486 -13.77119 -13.55889 -13.09711 -12.71180 -12.57424 -12.33920 -11.96763 -11.65636 -11.61148 -11.31036 -11.21979 -10.96863 -10.75850 -10.54741 -10.49069 -10.25226 -10.02426 -9.76077 -9.57738 -9.25291 -8.86908 -8.39512 -8.13053 -6.86901 -5.70925 -2.98231 3.26627 3.41239 3.52551 3.53426 3.54500 4.00915 4.54130 4.83287 4.98947 5.01596 5.30322 5.38525 5.53214 5.55589 5.78227 5.87929 5.94682 6.01901 6.10171 6.19107 6.37561 6.39124 6.52006 6.70446 6.80777 6.86975 6.94801 7.10480 7.37276 7.49293 7.72213 7.95172 8.06751 8.27211 8.45206 8.91806 9.30857 9.91510 10.35107 11.29468 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.007424 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.312553 B = 3770.879164 C = 4431.692197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.178 3.822 4 N -0.573 5.573 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.294 1.294 13 C 0.162 3.838 14 H 0.087 0.913 15 C -0.156 4.156 16 C 0.494 3.506 17 O -0.521 6.521 18 N -0.715 5.715 19 C 0.088 3.912 20 C -0.200 4.200 21 C -0.196 4.196 22 H 0.051 0.949 23 H 0.030 0.970 24 H 0.027 0.973 25 H 0.097 0.903 26 H 0.017 0.983 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.251 0.749 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 2.142 12.772 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.054 3.946 4 N -0.291 5.291 5 C -0.385 4.385 6 H 0.093 0.907 7 C -0.190 4.190 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.217 1.217 11 H -0.207 1.207 12 H -0.221 1.221 13 C 0.047 3.953 14 H 0.105 0.895 15 C -0.216 4.216 16 C 0.279 3.721 17 O -0.394 6.394 18 N -0.368 5.368 19 C -0.019 4.019 20 C -0.239 4.239 21 C -0.234 4.234 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.115 0.885 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.835 2.636 12.124 12.727 hybrid contribution 0.770 0.109 -0.475 0.911 sum 3.605 2.746 11.649 12.499 Atomic orbital electron populations 1.21608 0.98872 0.98888 0.99989 1.22246 0.92607 1.00788 1.00956 1.20973 0.80795 0.93794 0.99077 1.43911 1.02345 1.82715 1.00135 1.19260 0.90968 1.44873 0.83402 0.90681 1.24731 0.96082 1.00839 0.97372 1.70258 1.11129 1.46646 1.24792 0.86460 0.78895 0.79040 0.83675 1.21668 1.20747 1.22079 1.20214 0.97530 0.89438 0.88084 0.89533 1.22354 1.01743 0.99700 0.97793 1.22942 0.79971 0.89998 0.79191 1.90632 1.33464 1.52332 1.62984 1.45858 1.47784 1.20179 1.23017 1.21529 0.99809 0.88669 0.91923 1.23395 0.96104 0.99302 1.05056 1.23342 1.03302 1.03037 0.93735 0.92961 0.95099 0.95341 0.88456 0.96398 0.96984 0.89377 0.93836 0.93882 0.92429 0.91569 0.77104 0.84957 0.88752 0.88478 0.88382 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 37.16 0.37 -2.42 16 2 C -0.13 -2.96 5.43 -26.73 -0.15 -3.11 16 3 C 0.18 4.52 3.66 -4.04 -0.01 4.51 16 4 N -0.57 -14.33 2.22 -166.98 -0.37 -14.70 16 5 C -0.26 -6.97 9.68 -15.06 -0.15 -7.12 16 6 H 0.08 1.97 7.78 -52.49 -0.41 1.56 16 7 C 0.01 0.20 5.09 -17.43 -0.09 0.11 16 8 N -0.88 -24.70 8.01 55.49 0.44 -24.26 16 9 Si 0.89 21.87 29.63 -169.99 -5.04 16.83 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 C 0.16 3.24 3.12 -69.08 -0.22 3.02 16 14 H 0.09 1.63 7.78 -51.92 -0.40 1.23 16 15 C -0.16 -2.63 8.14 37.16 0.30 -2.33 16 16 C 0.49 9.75 6.85 -10.99 -0.08 9.67 16 17 O -0.52 -12.63 14.18 5.56 0.08 -12.56 16 18 N -0.72 -10.57 5.46 -53.80 -0.29 -10.86 16 19 C 0.09 1.19 6.43 -67.93 -0.44 0.75 16 20 C -0.20 -2.12 10.46 -26.69 -0.28 -2.40 16 21 C -0.20 -1.97 10.46 -26.69 -0.28 -2.25 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.10 2.58 6.22 -51.93 -0.32 2.26 16 26 H 0.02 0.39 6.07 -51.93 -0.32 0.07 16 27 H 0.01 0.30 6.45 -51.93 -0.33 -0.03 16 28 H 0.09 2.55 5.82 -51.93 -0.30 2.25 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.04 0.55 7.56 -51.93 -0.39 0.16 16 31 H 0.06 1.04 6.60 -51.93 -0.34 0.70 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.40 4.63 8.24 -40.82 -0.34 4.29 16 34 H 0.13 2.06 7.40 -51.93 -0.38 1.67 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -30.67 303.40 -7.67 -38.35 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.06 Total: 4.17 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.01 Total: -1.55 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.22 Total: -49.81 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.04 Total: 16.83 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.67 -7.67 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds