Wall clock time and date at job start Mon Mar 30 2020 03:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47499 * 2 1 4 4 N 1.46502 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99936 * 84.38846 * 4 3 2 6 6 H 1.07996 * 119.99902 * 184.36925 * 5 4 3 7 7 C 1.38808 * 119.99804 * 4.37028 * 5 4 3 8 8 N 1.31619 * 120.00562 * 333.96307 * 7 5 4 9 9 Si 1.86808 * 119.99835 * 154.23882 * 7 5 4 10 10 H 1.48499 * 109.47106 * 264.72765 * 9 7 5 11 11 H 1.48495 * 109.46849 * 24.72372 * 9 7 5 12 12 H 1.48500 * 109.47231 * 144.72647 * 9 7 5 13 13 C 1.46494 * 119.99925 * 264.38529 * 4 3 2 14 14 H 1.09008 * 109.47035 * 180.02562 * 13 4 3 15 15 C 1.53001 * 109.47068 * 60.00139 * 13 4 3 16 16 C 1.50703 * 109.47565 * 300.00012 * 13 4 3 17 17 O 1.21283 * 119.99655 * 0.02562 * 16 13 4 18 18 N 1.34768 * 120.00231 * 179.97438 * 16 13 4 19 19 C 1.46500 * 120.00088 * 179.97438 * 18 16 13 20 20 C 1.53002 * 117.49946 * 223.75056 * 19 18 16 21 21 C 1.52998 * 117.49918 * 155.08897 * 19 18 16 22 22 H 1.09005 * 109.46451 * 60.00020 * 1 2 3 23 23 H 1.08991 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46626 * 300.00511 * 1 2 3 25 25 H 1.09007 * 109.47080 * 240.00155 * 2 1 3 26 26 H 1.09001 * 109.47064 * 120.00373 * 2 1 3 27 27 H 1.08998 * 109.46936 * 59.99730 * 3 2 1 28 28 H 1.09001 * 109.47267 * 300.00248 * 3 2 1 29 29 H 0.96995 * 120.00588 * 180.27554 * 8 7 5 30 30 H 1.09004 * 109.47098 * 179.97438 * 15 13 4 31 31 H 1.08998 * 109.47197 * 299.99802 * 15 13 4 32 32 H 1.08998 * 109.46884 * 60.00355 * 15 13 4 33 33 H 0.97000 * 120.00174 * 0.02562 * 18 16 13 34 34 H 1.09005 * 115.54894 * 9.41755 * 19 18 16 35 35 H 1.08993 * 117.50063 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.50015 * 145.02342 * 20 19 18 37 37 H 1.09009 * 117.49754 * 214.97785 * 21 19 18 38 38 H 1.09000 * 117.50222 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1903 1.3262 -1.1793 6 1 5.2679 1.2551 -1.1732 7 6 3.4997 1.2998 -2.3832 8 7 2.2534 0.8781 -2.4179 9 14 4.3418 1.8557 -3.9553 10 1 4.0164 3.2814 -4.2137 11 1 5.8116 1.7019 -3.8105 12 1 3.8667 1.0257 -5.0914 13 6 4.2370 1.5666 1.2635 14 1 5.3089 1.5475 1.0657 15 6 3.8670 0.4020 2.1842 16 6 3.8728 2.8686 1.9293 17 8 3.0795 3.6186 1.4011 18 7 4.4278 3.1990 3.1121 19 6 4.0741 4.4650 3.7591 20 6 5.2110 5.2906 4.3648 21 6 4.2313 4.5499 5.2786 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.7722 0.8559 -3.2598 30 1 4.4119 0.4942 3.1237 31 1 2.7953 0.4215 2.3820 32 1 4.1306 -0.5397 1.7027 33 1 5.0620 2.5990 3.5348 34 1 3.2432 5.0074 3.3079 35 1 6.2219 4.8916 4.2824 36 1 5.1278 6.3761 4.3127 37 1 3.5040 5.1486 5.8271 38 1 4.5975 3.6637 5.7970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:55 Heat of formation + Delta-G solvation = -1.925487 kcal Electronic energy + Delta-G solvation = -18131.870903 eV Core-core repulsion = 15396.566150 eV Total energy + Delta-G solvation = -2735.304754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86152 -38.42032 -37.38227 -34.48388 -33.63195 -33.23727 -30.50406 -27.36595 -25.90927 -24.23376 -23.22724 -22.28238 -21.85676 -20.94978 -18.86551 -17.74272 -17.53449 -16.92470 -15.98358 -15.62206 -15.37458 -15.11605 -14.91812 -14.43457 -14.04541 -13.73522 -13.52921 -13.17884 -13.10620 -12.77577 -12.63409 -12.49683 -12.38599 -12.24532 -12.11072 -11.95106 -11.61562 -11.48025 -11.39175 -11.10512 -10.60424 -10.16317 -9.60145 -8.82323 -7.77187 -5.04257 1.45857 1.52437 1.57001 1.79345 2.22147 2.56480 3.05265 3.31450 3.63968 3.85583 4.04762 4.13243 4.13773 4.37496 4.43998 4.57021 4.72761 4.78652 4.86005 4.90028 4.95273 5.03802 5.04393 5.09994 5.24625 5.25403 5.41880 5.54900 5.60981 5.65049 5.68830 5.99097 6.30133 6.38870 6.70684 7.24784 7.47623 7.95713 8.35384 9.21795 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.007424 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.312553 B = 3770.879164 C = 4431.692197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.194 3.806 4 N -0.592 5.592 5 C -0.264 4.264 6 H 0.081 0.919 7 C -0.044 4.044 8 N -0.901 5.901 9 Si 0.945 3.055 10 H -0.303 1.303 11 H -0.269 1.269 12 H -0.296 1.296 13 C 0.152 3.848 14 H 0.099 0.901 15 C -0.143 4.143 16 C 0.495 3.505 17 O -0.577 6.577 18 N -0.692 5.692 19 C 0.044 3.956 20 C -0.185 4.185 21 C -0.165 4.165 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.006 0.994 28 H 0.046 0.954 29 H 0.244 0.756 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 1.892 15.294 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.069 3.931 4 N -0.312 5.312 5 C -0.393 4.393 6 H 0.098 0.902 7 C -0.240 4.240 8 N -0.548 5.548 9 Si 0.775 3.225 10 H -0.231 1.231 11 H -0.194 1.194 12 H -0.223 1.223 13 C 0.040 3.960 14 H 0.117 0.883 15 C -0.202 4.202 16 C 0.281 3.719 17 O -0.455 6.455 18 N -0.345 5.345 19 C -0.062 4.062 20 C -0.223 4.223 21 C -0.204 4.204 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.402 2.379 14.731 15.557 hybrid contribution 0.370 0.253 -1.118 1.205 sum 4.772 2.632 13.612 14.663 Atomic orbital electron populations 1.21518 0.96846 1.00350 0.99881 1.22036 0.94426 0.99104 0.99956 1.20621 0.81609 0.94376 0.96523 1.44036 1.02270 1.83433 1.01436 1.19562 0.91368 1.43925 0.84486 0.90161 1.25361 0.96991 1.01774 0.99827 1.70417 1.12054 1.47665 1.24635 0.85568 0.78687 0.77443 0.80805 1.23090 1.19402 1.22260 1.20537 0.97709 0.90730 0.87050 0.88307 1.22191 1.01399 0.97668 0.98975 1.22610 0.79657 0.89328 0.80336 1.90618 1.36218 1.53798 1.64862 1.45453 1.46782 1.20916 1.21360 1.21580 1.01292 0.88702 0.94626 1.23480 0.95847 0.99639 1.03345 1.23448 1.02498 1.03415 0.90994 0.94624 0.92790 0.93864 0.91591 0.94938 0.97612 0.93594 0.94620 0.89222 0.93843 0.92091 0.74926 0.87936 0.87555 0.87658 0.87048 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.91 71.98 0.71 -4.51 16 2 C -0.12 -5.47 5.43 30.59 0.17 -5.30 16 3 C 0.19 10.13 3.66 86.38 0.32 10.45 16 4 N -0.59 -30.01 2.22 -682.21 -1.51 -31.53 16 5 C -0.26 -14.53 9.68 84.03 0.81 -13.72 16 6 H 0.08 4.21 7.78 -2.91 -0.02 4.19 16 7 C -0.04 -2.48 5.09 84.86 0.43 -2.05 16 8 N -0.90 -52.23 8.01 21.65 0.17 -52.06 16 9 Si 0.95 46.02 29.63 68.60 2.03 48.05 16 10 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 13 C 0.15 5.95 3.12 44.25 0.14 6.09 16 14 H 0.10 3.57 7.78 -2.38 -0.02 3.55 16 15 C -0.14 -4.49 8.14 71.98 0.59 -3.90 16 16 C 0.49 19.32 6.85 87.66 0.60 19.92 16 17 O -0.58 -28.78 14.18 -3.04 -0.04 -28.82 16 18 N -0.69 -19.04 5.46 -442.53 -2.42 -21.46 16 19 C 0.04 1.12 6.43 44.99 0.29 1.41 16 20 C -0.18 -3.34 10.46 30.62 0.32 -3.02 16 21 C -0.17 -2.71 10.46 30.62 0.32 -2.39 16 22 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 3.57 6.22 -2.38 -0.01 3.56 16 26 H 0.03 1.40 6.07 -2.39 -0.01 1.39 16 27 H 0.01 0.30 6.45 -2.39 -0.02 0.28 16 28 H 0.05 2.79 5.82 -2.39 -0.01 2.78 16 29 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.09 1.94 7.56 -2.38 -0.02 1.93 16 31 H 0.04 1.49 6.60 -2.39 -0.02 1.47 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.41 8.18 8.24 -92.71 -0.76 7.42 16 34 H 0.10 3.25 7.40 -2.38 -0.02 3.23 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.58 303.40 3.21 -66.37 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.28 Total: 16.47 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.70 Total: 2.97 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.75 Total: -105.04 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.04 Total: -28.82 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -69.58 3.21 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.446 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds