Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46502 * 109.47182 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99686 * 265.78559 * 4 3 2 6 6 H 1.07994 * 120.00172 * 146.21933 * 5 4 3 7 7 C 1.38812 * 119.99967 * 326.21399 * 5 4 3 8 8 N 1.31625 * 120.00467 * 337.68425 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 157.68267 * 7 5 4 10 10 H 1.48500 * 109.46970 * 90.00321 * 9 7 5 11 11 H 1.48493 * 109.47177 * 210.00108 * 9 7 5 12 12 H 1.48499 * 109.46958 * 330.00049 * 9 7 5 13 13 C 1.46495 * 120.00337 * 85.78302 * 4 3 2 14 14 C 1.52999 * 109.47031 * 89.99889 * 13 4 3 15 15 C 1.50698 * 109.47251 * 180.02562 * 14 13 4 16 16 O 1.21282 * 120.00035 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00273 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00104 * 180.02562 * 17 15 14 19 19 C 1.53003 * 117.49556 * 223.61977 * 18 17 15 20 20 C 1.52991 * 117.49775 * 154.99494 * 18 17 15 21 21 H 1.09000 * 109.47352 * 300.00975 * 1 2 3 22 22 H 1.09003 * 109.46479 * 60.00076 * 1 2 3 23 23 H 1.08994 * 109.46755 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47541 * 239.99495 * 2 1 3 25 25 H 1.09000 * 109.46666 * 119.99449 * 2 1 3 26 26 H 1.08996 * 109.47325 * 59.99362 * 3 2 1 27 27 H 1.09002 * 109.46789 * 299.99838 * 3 2 1 28 28 H 0.96993 * 120.00511 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46859 * 330.00445 * 13 4 3 30 30 H 1.08998 * 109.47127 * 210.00252 * 13 4 3 31 31 H 1.08998 * 109.47461 * 300.00158 * 14 13 4 32 32 H 1.08998 * 109.47193 * 60.00119 * 14 13 4 33 33 H 0.96999 * 119.99997 * 359.97438 * 17 15 14 34 34 H 1.08999 * 115.54839 * 9.32462 * 18 17 15 35 35 H 1.08997 * 117.49542 * 359.97438 * 19 18 17 36 36 H 1.08998 * 117.49422 * 145.01802 * 19 18 17 37 37 H 1.09001 * 117.50214 * 214.97541 * 20 18 17 38 38 H 1.09000 * 117.50033 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5295 1.1819 6 1 5.1334 1.0167 1.2984 7 6 3.6723 2.2769 2.2307 8 7 2.7988 3.2317 1.9901 9 14 4.2150 1.9277 3.9837 10 1 5.4040 2.7561 4.3081 11 1 3.1106 2.2594 4.9192 12 1 4.5619 0.4900 4.1173 13 6 4.2371 1.3494 -1.2661 14 6 4.4918 2.7556 -1.8126 15 6 5.2443 2.6599 -3.1147 16 8 5.5475 1.5739 -3.5615 17 7 5.5813 3.7812 -3.7824 18 6 6.3124 3.6880 -5.0486 19 6 7.4769 4.6566 -5.2648 20 6 6.1685 4.8492 -6.0343 21 1 -0.3634 0.5140 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3632 -1.0276 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4367 3.7537 2.7230 29 1 3.6476 0.7812 -1.9859 30 1 5.1895 0.8465 -1.0988 31 1 3.5394 3.2585 -1.9799 32 1 5.0812 3.3238 -1.0929 33 1 5.3392 4.6498 -3.4249 34 1 6.4082 2.6846 -5.4633 35 1 7.6987 5.3633 -4.4651 36 1 8.3392 4.2904 -5.8218 37 1 6.1702 4.6098 -7.0977 38 1 5.5297 5.6822 -5.7410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050273103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -7.401309 kcal Electronic energy + Delta-G solvation = -17260.843553 eV Core-core repulsion = 14525.301350 eV Total energy + Delta-G solvation = -2735.542203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47143 -37.08910 -36.05731 -32.72705 -32.44025 -31.77688 -29.07637 -25.53180 -24.43610 -22.51780 -22.09304 -21.15135 -20.29779 -19.45285 -16.93689 -16.48830 -16.29482 -14.96058 -14.87119 -14.45286 -14.09667 -13.86275 -13.47767 -13.02441 -12.70106 -12.39505 -12.31025 -11.75243 -11.71824 -11.32735 -11.21809 -10.96154 -10.76551 -10.75845 -10.61370 -10.30700 -10.27983 -9.84661 -9.77488 -9.44114 -9.40135 -8.62702 -8.46147 -6.60904 -5.78157 -3.30963 2.97121 3.31593 3.37082 3.44422 3.49245 3.86658 4.49776 4.70332 4.86430 4.89703 5.18454 5.32009 5.46895 5.63273 5.70787 5.88956 5.90192 5.92917 5.97653 6.00946 6.14804 6.29774 6.53732 6.58142 6.64728 6.66200 6.85721 6.89629 6.96375 7.11480 7.33066 7.73173 7.79150 7.85469 8.51094 8.58553 9.21026 9.84783 10.41054 11.22091 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.005613 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.810215 B = 4986.991468 C = 5737.566173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.143 3.857 4 N -0.585 5.585 5 C -0.255 4.255 6 H 0.062 0.938 7 C 0.008 3.992 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.165 3.835 14 C -0.155 4.155 15 C 0.520 3.480 16 O -0.546 6.546 17 N -0.713 5.713 18 C 0.084 3.916 19 C -0.198 4.198 20 C -0.194 4.194 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.018 0.982 28 H 0.254 0.746 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 3.164 -10.798 11.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.017 3.983 4 N -0.304 5.304 5 C -0.385 4.385 6 H 0.080 0.920 7 C -0.191 4.191 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.038 3.962 14 C -0.197 4.197 15 C 0.309 3.691 16 O -0.423 6.423 17 N -0.364 5.364 18 C -0.023 4.023 19 C -0.236 4.236 20 C -0.232 4.232 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.384 2.453 -10.956 11.478 hybrid contribution 0.165 0.596 1.019 1.192 sum 2.549 3.049 -9.938 10.703 Atomic orbital electron populations 1.21692 0.97576 0.99904 1.01038 1.22104 0.93649 1.01755 1.00671 1.21027 0.83318 0.92236 1.01694 1.43989 1.01138 1.84358 1.00937 1.19115 1.05673 1.24006 0.89679 0.92036 1.25063 0.99809 0.95183 0.99068 1.69976 1.33243 1.19363 1.30751 0.86417 0.77741 0.78360 0.85006 1.21374 1.21536 1.20361 1.20661 0.96470 0.91147 0.87962 1.22510 1.00029 1.05288 0.91915 1.21518 0.78105 0.83247 0.86261 1.90628 1.54833 1.27664 1.69189 1.45676 1.58432 1.09810 1.22436 1.21553 0.97023 0.96748 0.86975 1.23407 0.92889 1.03920 1.03421 1.23352 1.00576 1.01124 0.98186 0.93116 0.93668 0.94188 0.94057 0.92536 0.88229 0.96358 0.93633 0.93980 0.93188 0.89769 0.88657 0.76469 0.84744 0.88566 0.88276 0.88183 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.91 6.26 -26.73 -0.17 -3.08 16 3 C 0.14 3.35 5.25 -4.04 -0.02 3.33 16 4 N -0.59 -14.46 2.45 -173.24 -0.43 -14.88 16 5 C -0.25 -6.87 9.49 -15.06 -0.14 -7.02 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.22 4.93 -17.43 -0.09 0.14 16 8 N -0.89 -24.79 11.32 55.49 0.63 -24.16 16 9 Si 0.90 21.32 29.61 -169.99 -5.03 16.28 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.17 3.63 4.98 -4.04 -0.02 3.61 16 14 C -0.15 -2.95 6.02 -27.88 -0.17 -3.11 16 15 C 0.52 9.16 7.83 -10.98 -0.09 9.07 16 16 O -0.55 -11.29 15.55 5.56 0.09 -11.20 16 17 N -0.71 -9.79 5.57 -53.81 -0.30 -10.09 16 18 C 0.08 1.02 6.43 -67.93 -0.44 0.58 16 19 C -0.20 -1.92 10.46 -26.73 -0.28 -2.20 16 20 C -0.19 -1.79 10.45 -26.73 -0.28 -2.07 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.62 5.32 -51.93 -0.28 2.34 16 27 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.91 8.03 -51.92 -0.42 0.49 16 30 H 0.05 1.14 8.00 -51.93 -0.42 0.73 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 33 H 0.40 4.61 8.83 -40.82 -0.36 4.25 16 34 H 0.13 1.82 7.40 -51.93 -0.38 1.43 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -29.73 319.30 -8.03 -37.75 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.47 Total: 4.34 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.32 Total: -2.85 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.10 Total: -49.14 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.73 -8.03 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050273103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.353 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds