Wall clock time and date at job start Mon Mar 30 2020 03:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46502 * 109.47182 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99686 * 265.78559 * 4 3 2 6 6 H 1.07994 * 120.00172 * 146.21933 * 5 4 3 7 7 C 1.38812 * 119.99967 * 326.21399 * 5 4 3 8 8 N 1.31625 * 120.00467 * 337.68425 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 157.68267 * 7 5 4 10 10 H 1.48500 * 109.46970 * 90.00321 * 9 7 5 11 11 H 1.48493 * 109.47177 * 210.00108 * 9 7 5 12 12 H 1.48499 * 109.46958 * 330.00049 * 9 7 5 13 13 C 1.46495 * 120.00337 * 85.78302 * 4 3 2 14 14 C 1.52999 * 109.47031 * 89.99889 * 13 4 3 15 15 C 1.50698 * 109.47251 * 180.02562 * 14 13 4 16 16 O 1.21282 * 120.00035 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00273 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00104 * 180.02562 * 17 15 14 19 19 C 1.53003 * 117.49556 * 223.61977 * 18 17 15 20 20 C 1.52991 * 117.49775 * 154.99494 * 18 17 15 21 21 H 1.09000 * 109.47352 * 300.00975 * 1 2 3 22 22 H 1.09003 * 109.46479 * 60.00076 * 1 2 3 23 23 H 1.08994 * 109.46755 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47541 * 239.99495 * 2 1 3 25 25 H 1.09000 * 109.46666 * 119.99449 * 2 1 3 26 26 H 1.08996 * 109.47325 * 59.99362 * 3 2 1 27 27 H 1.09002 * 109.46789 * 299.99838 * 3 2 1 28 28 H 0.96993 * 120.00511 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46859 * 330.00445 * 13 4 3 30 30 H 1.08998 * 109.47127 * 210.00252 * 13 4 3 31 31 H 1.08998 * 109.47461 * 300.00158 * 14 13 4 32 32 H 1.08998 * 109.47193 * 60.00119 * 14 13 4 33 33 H 0.96999 * 119.99997 * 359.97438 * 17 15 14 34 34 H 1.08999 * 115.54839 * 9.32462 * 18 17 15 35 35 H 1.08997 * 117.49542 * 359.97438 * 19 18 17 36 36 H 1.08998 * 117.49422 * 145.01802 * 19 18 17 37 37 H 1.09001 * 117.50214 * 214.97541 * 20 18 17 38 38 H 1.09000 * 117.50033 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5295 1.1819 6 1 5.1334 1.0167 1.2984 7 6 3.6723 2.2769 2.2307 8 7 2.7988 3.2317 1.9901 9 14 4.2150 1.9277 3.9837 10 1 5.4040 2.7561 4.3081 11 1 3.1106 2.2594 4.9192 12 1 4.5619 0.4900 4.1173 13 6 4.2371 1.3494 -1.2661 14 6 4.4918 2.7556 -1.8126 15 6 5.2443 2.6599 -3.1147 16 8 5.5475 1.5739 -3.5615 17 7 5.5813 3.7812 -3.7824 18 6 6.3124 3.6880 -5.0486 19 6 7.4769 4.6566 -5.2648 20 6 6.1685 4.8492 -6.0343 21 1 -0.3634 0.5140 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3632 -1.0276 0.0005 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4367 3.7537 2.7230 29 1 3.6476 0.7812 -1.9859 30 1 5.1895 0.8465 -1.0988 31 1 3.5394 3.2585 -1.9799 32 1 5.0812 3.3238 -1.0929 33 1 5.3392 4.6498 -3.4249 34 1 6.4082 2.6846 -5.4633 35 1 7.6987 5.3633 -4.4651 36 1 8.3392 4.2904 -5.8218 37 1 6.1702 4.6098 -7.0977 38 1 5.5297 5.6822 -5.7410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050273103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:43 Heat of formation + Delta-G solvation = -25.118931 kcal Electronic energy + Delta-G solvation = -17261.611847 eV Core-core repulsion = 14525.301350 eV Total energy + Delta-G solvation = -2736.310497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81022 -38.29993 -37.74084 -34.23194 -34.01630 -33.51938 -30.79676 -27.37078 -26.12876 -23.56817 -23.25865 -22.51121 -21.74761 -21.14319 -18.71717 -18.05829 -17.38908 -16.76429 -16.47291 -15.86777 -15.49737 -15.44470 -15.06838 -14.66165 -14.01582 -13.95241 -13.64269 -13.44404 -13.14296 -12.76678 -12.57659 -12.47864 -12.42158 -12.31865 -12.10415 -12.03377 -11.69571 -11.58893 -11.45613 -11.25913 -10.88416 -10.48732 -9.71308 -8.60522 -7.81944 -5.38778 1.46427 1.50077 1.59253 1.59303 2.14425 2.53376 3.00405 3.25462 3.61945 3.81931 4.03156 4.08616 4.12343 4.29340 4.35596 4.41347 4.54405 4.72379 4.76457 4.80337 4.87422 4.93733 5.03343 5.11229 5.14636 5.21751 5.24949 5.33143 5.40027 5.56739 5.57397 5.69627 5.92103 6.47540 6.52422 7.17677 7.25340 7.87419 8.39276 9.14979 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.005613 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.810215 B = 4986.991468 C = 5737.566173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.144 3.856 4 N -0.599 5.599 5 C -0.268 4.268 6 H 0.052 0.948 7 C -0.031 4.031 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.167 3.833 14 C -0.140 4.140 15 C 0.525 3.475 16 O -0.582 6.582 17 N -0.695 5.695 18 C 0.046 3.954 19 C -0.185 4.185 20 C -0.169 4.169 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 3.960 -11.740 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.319 5.319 5 C -0.399 4.399 6 H 0.069 0.931 7 C -0.228 4.228 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.041 3.959 14 C -0.182 4.182 15 C 0.313 3.687 16 O -0.462 6.462 17 N -0.346 5.346 18 C -0.060 4.060 19 C -0.224 4.224 20 C -0.207 4.207 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.394 3.291 -11.930 12.605 hybrid contribution 0.203 0.374 1.223 1.295 sum 2.597 3.665 -10.707 11.611 Atomic orbital electron populations 1.21624 0.94696 1.01637 1.01486 1.21968 0.96160 0.99427 0.99852 1.20980 0.82737 0.93821 1.00576 1.44135 1.01749 1.84812 1.01211 1.19236 1.05679 1.23897 0.91042 0.93070 1.25645 1.00190 0.95061 1.01940 1.70080 1.34136 1.19955 1.31409 0.85522 0.77313 0.78019 0.81047 1.20959 1.21454 1.20305 1.20575 0.95422 0.92778 0.87161 1.22157 1.00430 1.02987 0.92663 1.21060 0.78074 0.83721 0.85891 1.90616 1.56497 1.29105 1.69975 1.45426 1.57352 1.09167 1.22648 1.21680 0.99824 0.97357 0.87106 1.23489 0.93107 1.02276 1.03496 1.23454 0.99800 0.99089 0.98366 0.93579 0.92317 0.91814 0.93647 0.94497 0.90863 0.95785 0.93807 0.93743 0.94767 0.89265 0.89759 0.75016 0.86543 0.88063 0.87019 0.86512 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.73 16 2 C -0.13 -5.46 6.26 30.60 0.19 -5.27 16 3 C 0.14 6.81 5.25 86.38 0.45 7.26 16 4 N -0.60 -30.09 2.45 -702.01 -1.72 -31.81 16 5 C -0.27 -14.72 9.49 84.03 0.80 -13.92 16 6 H 0.05 2.86 7.92 -2.91 -0.02 2.83 16 7 C -0.03 -1.68 4.93 84.86 0.42 -1.26 16 8 N -0.91 -51.20 11.32 21.65 0.25 -50.96 16 9 Si 0.95 44.08 29.61 68.60 2.03 46.11 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.17 7.49 4.98 86.38 0.43 7.92 16 14 C -0.14 -5.36 6.02 29.85 0.18 -5.18 16 15 C 0.52 18.44 7.83 87.66 0.69 19.13 16 16 O -0.58 -24.36 15.55 -3.04 -0.05 -24.41 16 17 N -0.70 -18.37 5.57 -442.53 -2.46 -20.83 16 18 C 0.05 1.06 6.43 44.99 0.29 1.35 16 19 C -0.19 -3.12 10.46 30.60 0.32 -2.80 16 20 C -0.17 -2.60 10.45 30.59 0.32 -2.28 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.07 3.90 5.32 -2.39 -0.01 3.89 16 27 H 0.02 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.04 1.94 8.03 -2.38 -0.02 1.92 16 30 H 0.03 1.61 8.00 -2.39 -0.02 1.59 16 31 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.41 8.82 8.83 -92.71 -0.82 8.00 16 34 H 0.12 3.12 7.40 -2.39 -0.02 3.10 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -63.94 319.30 3.05 -60.89 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.21 Total: 19.80 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.80 Total: 1.22 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.94 Total: -103.60 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.94 3.05 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050273103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.772 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds