Wall clock time and date at job start Mon Mar 30 2020 03:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46801 * 2 1 4 4 H 1.09001 * 109.46865 * 55.00140 * 3 2 1 5 5 C 1.50696 * 109.46867 * 175.00062 * 3 2 1 6 6 H 1.07997 * 120.00342 * 120.00376 * 5 3 2 7 7 C 1.37881 * 120.00100 * 299.99631 * 5 3 2 8 8 N 1.31508 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00095 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.46937 * 90.00324 * 9 7 5 11 11 H 1.48495 * 109.47312 * 210.00273 * 9 7 5 12 12 H 1.48506 * 109.47192 * 330.00934 * 9 7 5 13 13 N 1.46493 * 109.47359 * 295.00085 * 3 2 1 14 14 C 1.34775 * 120.00160 * 84.99828 * 13 3 2 15 15 O 1.21278 * 119.99934 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00196 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.50309 * 299.92672 * 16 14 13 18 18 C 1.53120 * 109.50402 * 179.80168 * 16 14 13 19 19 C 1.53120 * 109.15972 * 182.40395 * 18 16 14 20 20 C 1.53034 * 109.27663 * 57.65936 * 19 18 16 21 21 N 1.46850 * 109.52564 * 300.81923 * 20 19 18 22 22 C 1.46850 * 111.19713 * 61.73898 * 21 20 19 23 23 H 1.09011 * 109.46971 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47158 * 299.99711 * 1 2 3 25 25 H 1.08997 * 109.47433 * 60.00089 * 1 2 3 26 26 H 1.09001 * 109.47158 * 240.00289 * 2 1 3 27 27 H 1.08997 * 109.46912 * 119.99983 * 2 1 3 28 28 H 0.96999 * 120.00282 * 179.97438 * 8 7 5 29 29 H 0.97006 * 120.00208 * 265.00054 * 13 3 2 30 30 H 1.08996 * 109.52458 * 302.31729 * 18 16 14 31 31 H 1.08999 * 109.51695 * 62.44011 * 18 16 14 32 32 H 1.09000 * 109.49976 * 177.59581 * 19 18 16 33 33 H 1.09002 * 109.50465 * 297.67936 * 19 18 16 34 34 H 1.09007 * 109.46201 * 60.83416 * 20 19 18 35 35 H 1.09001 * 109.46272 * 180.79942 * 20 19 18 36 36 H 1.00901 * 110.99645 * 297.64705 * 21 20 19 37 37 H 1.08995 * 109.45831 * 178.23975 * 22 21 20 38 38 H 1.08998 * 109.45719 * 58.27825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8801 1.3811 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3109 2.1545 12 1 6.6131 0.8397 0.0269 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6643 -1.3669 15 8 -0.3394 2.6326 -0.4341 16 6 0.0361 3.3377 -2.6548 17 1 0.7263 4.1539 -2.8677 18 6 -1.3858 3.8904 -2.5236 19 6 -1.8053 4.5194 -3.8551 20 6 -1.7087 3.4683 -4.9631 21 7 -0.3295 2.9712 -5.0491 22 6 0.0794 2.3208 -3.7976 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0617 2.9495 29 1 2.2718 2.1232 -1.9978 30 1 -2.0699 3.0800 -2.2719 31 1 -1.4118 4.6460 -1.7385 32 1 -2.8325 4.8767 -3.7811 33 1 -1.1450 5.3551 -4.0868 34 1 -2.3800 2.6397 -4.7372 35 1 -1.9931 3.9168 -5.9150 36 1 0.3077 3.7136 -5.2957 37 1 1.0936 1.9358 -3.9031 38 1 -0.6002 1.4976 -3.5773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:44 Heat of formation + Delta-G solvation = -59.901688 kcal Electronic energy + Delta-G solvation = -18076.842757 eV Core-core repulsion = 15339.023967 eV Total energy + Delta-G solvation = -2737.818790 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78526 -37.74881 -35.03349 -32.47958 -31.76086 -31.38259 -30.31433 -26.95356 -24.03515 -23.43634 -22.81193 -20.89913 -19.80544 -19.23255 -17.16569 -16.02904 -15.68167 -15.33033 -15.15069 -14.68919 -14.33512 -13.91459 -13.29628 -13.05168 -12.66606 -12.62884 -12.19636 -11.89179 -11.59013 -11.30022 -11.24523 -11.20809 -10.96977 -10.84532 -10.79666 -10.55206 -10.31077 -10.15237 -9.62116 -9.06158 -9.02677 -8.50298 -8.34482 -7.79531 -6.12119 -4.21573 3.24189 3.31062 3.32715 3.42097 4.03661 4.26366 4.40245 4.76071 4.85111 5.04833 5.09488 5.19300 5.30029 5.44570 5.52613 5.64105 5.77424 5.92247 5.93420 6.03327 6.24463 6.37026 6.40095 6.47060 6.67165 6.88019 7.05122 7.20802 7.26934 7.38317 7.48184 7.62759 7.74662 7.91334 8.19258 8.69594 8.78818 9.16947 9.46199 10.93179 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037757 B = 0.005888 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.414989 B = 4754.429119 C = 5037.481963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.549 6.549 16 C -0.147 4.147 17 H 0.088 0.912 18 C -0.097 4.097 19 C -0.158 4.158 20 C 0.054 3.946 21 N -0.683 5.683 22 C 0.068 3.932 23 H 0.022 0.978 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.340 0.660 37 H 0.081 0.919 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 5.263 -12.145 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.428 6.428 16 C -0.170 4.170 17 H 0.106 0.894 18 C -0.135 4.135 19 C -0.197 4.197 20 C -0.075 4.075 21 N -0.310 5.310 22 C -0.062 4.062 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.100 0.900 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.982 4.512 -11.588 14.261 hybrid contribution 1.469 0.820 0.464 1.745 sum -5.513 5.331 -11.124 13.512 Atomic orbital electron populations 1.21836 0.98401 0.97966 1.01181 1.21922 0.92562 0.99839 1.02237 1.18764 0.94124 0.89186 0.81128 0.93472 1.21237 0.90780 1.38974 1.06247 0.92160 1.24886 0.98564 0.94806 0.95407 1.69893 1.35121 1.37612 1.09349 0.86468 0.84923 0.77630 0.78186 1.20608 1.21068 1.19851 1.46508 1.14650 1.55953 1.18393 1.20196 0.82712 0.79333 0.88691 1.90657 1.51550 1.59941 1.40638 1.22113 0.99028 0.99896 0.95993 0.89423 1.21326 0.94786 1.00898 0.96513 1.22300 1.01923 0.98970 0.96490 1.22055 0.90761 0.97065 0.97667 1.60710 1.03676 1.34491 1.32154 1.22008 1.02175 0.95944 0.86105 0.95908 0.93251 0.94289 0.95038 0.88368 0.92580 0.78092 0.91104 0.91374 0.91344 0.92128 0.90843 0.90878 0.84305 0.90026 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.75 2.24 -69.09 -0.15 6.60 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -14.35 4.92 -54.94 -0.27 -14.62 16 14 C 0.51 9.77 5.73 -10.98 -0.06 9.71 16 15 O -0.55 -12.65 13.12 5.56 0.07 -12.58 16 16 C -0.15 -2.08 2.67 -91.69 -0.25 -2.32 16 17 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.10 -1.31 4.58 -26.61 -0.12 -1.43 16 19 C -0.16 -1.59 6.08 -26.65 -0.16 -1.75 16 20 C 0.05 0.53 6.55 -3.83 -0.03 0.51 16 21 N -0.68 -7.34 6.87 -113.81 -0.78 -8.12 16 22 C 0.07 0.86 5.73 -3.83 -0.02 0.83 16 23 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 25 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.86 7.98 -40.82 -0.33 6.53 16 30 H 0.07 1.05 8.05 -51.93 -0.42 0.64 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 3.16 8.86 -39.29 -0.35 2.81 16 37 H 0.08 1.00 7.59 -51.93 -0.39 0.61 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -29.33 297.44 -8.14 -37.47 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.23 Total: 8.42 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.02 Total: -6.48 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.43 Total: -46.85 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.33 -8.14 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.432 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds