Wall clock time and date at job start Mon Mar 30 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47181 * 84.99530 * 16 14 13 18 18 N 1.46899 * 109.46712 * 324.99738 * 16 14 13 19 19 C 1.52992 * 109.47001 * 204.99835 * 16 14 13 20 20 C 1.53004 * 117.49905 * 253.74450 * 19 16 14 21 21 C 1.53007 * 117.49739 * 185.08851 * 19 16 14 22 22 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 23 23 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 26 26 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 28 28 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 29 29 H 1.09010 * 109.46853 * 60.00093 * 17 16 14 30 30 H 1.08992 * 109.47410 * 179.97438 * 17 16 14 31 31 H 1.09005 * 109.47147 * 300.00310 * 17 16 14 32 32 H 1.00895 * 111.00285 * 299.99781 * 18 16 14 33 33 H 1.00904 * 111.00294 * 63.96009 * 18 16 14 34 34 H 1.08999 * 115.55255 * 39.41835 * 19 16 14 35 35 H 1.09004 * 117.49729 * 0.02562 * 20 19 16 36 36 H 1.08997 * 117.50213 * 145.02047 * 20 19 16 37 37 H 1.08999 * 117.49665 * 214.97706 * 21 19 16 38 38 H 1.09000 * 117.49830 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -0.5191 2.2951 -3.6259 18 7 1.2118 3.9867 -3.2519 19 6 -1.0360 4.3912 -2.3683 20 6 -2.4718 4.0689 -2.7876 21 6 -1.6611 5.1070 -3.5675 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0608 2.9500 28 1 2.2720 2.1231 -1.9978 29 1 -1.3911 1.8141 -3.1826 30 1 -0.8077 2.7827 -4.5570 31 1 0.2452 1.5451 -3.8299 32 1 1.5975 4.6806 -2.6293 33 1 1.9092 3.3045 -3.5097 34 1 -0.8961 4.9685 -1.4544 35 1 -2.6522 3.1067 -3.2670 36 1 -3.2765 4.4345 -2.1497 37 1 -1.9328 6.1552 -3.4422 38 1 -1.3078 4.8283 -4.5602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:41 Heat of formation + Delta-G solvation = -19.794062 kcal Electronic energy + Delta-G solvation = -18257.487150 eV Core-core repulsion = 15521.407557 eV Total energy + Delta-G solvation = -2736.079593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90716 -37.40732 -34.99230 -33.97039 -32.16878 -30.68943 -28.81157 -26.98701 -24.73372 -23.14348 -22.18198 -21.17838 -19.50657 -18.70455 -17.35141 -16.22981 -15.89473 -15.51088 -15.19014 -14.41715 -14.29312 -13.74456 -13.23605 -13.00362 -12.71097 -12.16587 -12.09418 -11.75541 -11.51083 -11.29299 -11.08868 -11.01832 -10.88739 -10.77120 -10.37291 -10.27653 -10.17382 -9.99436 -9.81074 -9.62200 -9.07726 -8.54881 -8.25162 -7.84288 -6.16208 -4.26116 3.20471 3.28545 3.30722 3.34150 3.79157 4.14488 4.34304 4.63345 4.81951 5.03286 5.14883 5.18605 5.24289 5.47861 5.59907 5.73911 5.87805 5.95202 6.03298 6.17957 6.27822 6.36142 6.39945 6.43235 6.63252 6.99623 7.03786 7.18854 7.33547 7.41723 7.44993 7.58190 7.69523 7.86249 8.14573 8.62055 8.74165 9.09550 9.41711 10.89008 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.006484 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.628092 B = 4317.135616 C = 4699.649712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.710 5.710 14 C 0.474 3.526 15 O -0.541 6.541 16 C 0.131 3.869 17 C -0.138 4.138 18 N -0.829 5.829 19 C -0.121 4.121 20 C -0.176 4.176 21 C -0.165 4.165 22 H 0.038 0.962 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.099 0.901 27 H 0.264 0.736 28 H 0.383 0.617 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.347 0.653 33 H 0.342 0.658 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 4.759 -10.735 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.359 5.359 14 C 0.256 3.744 15 O -0.417 6.417 16 C 0.035 3.965 17 C -0.196 4.196 18 N -0.361 5.361 19 C -0.140 4.140 20 C -0.214 4.214 21 C -0.202 4.202 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.215 0.785 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.733 4.861 -10.407 13.315 hybrid contribution 1.908 -0.501 0.714 2.099 sum -4.825 4.360 -9.693 11.672 Atomic orbital electron populations 1.21840 0.98345 0.98009 1.01237 1.21925 0.92617 0.99826 1.02204 1.18772 0.94165 0.89176 0.81012 0.93443 1.21255 0.90709 1.39059 1.06271 0.92159 1.24895 0.98635 0.94774 0.95374 1.69911 1.35060 1.37587 1.09334 0.86403 0.84826 0.77807 0.78124 1.19755 1.20866 1.20846 1.46549 1.14807 1.56173 1.18337 1.21364 0.82940 0.79911 0.90140 1.90658 1.51129 1.59400 1.40549 1.20529 0.91631 0.93126 0.91192 1.21891 1.01462 0.97529 0.98726 1.58897 1.10216 1.18986 1.48016 1.21785 0.92984 1.00343 0.98879 1.23070 0.94041 1.00573 1.03697 1.22864 1.03621 0.97097 0.96621 0.94257 0.95874 0.93210 0.95133 0.88331 0.92592 0.78496 0.91268 0.91048 0.92239 0.83959 0.84454 0.87873 0.88399 0.89100 0.89355 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.59 11.30 55.43 0.63 -23.96 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 N -0.71 -14.20 4.92 -54.93 -0.27 -14.47 16 14 C 0.47 9.12 5.24 -10.98 -0.06 9.06 16 15 O -0.54 -12.46 13.37 5.56 0.07 -12.39 16 16 C 0.13 1.92 0.99 -132.76 -0.13 1.79 16 17 C -0.14 -1.80 7.38 37.16 0.27 -1.52 16 18 N -0.83 -10.41 8.65 -0.19 0.00 -10.41 16 19 C -0.12 -1.72 4.69 -90.62 -0.42 -2.15 16 20 C -0.18 -2.21 9.66 -26.69 -0.26 -2.46 16 21 C -0.16 -1.90 9.84 -26.69 -0.26 -2.16 16 22 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.38 6.67 7.02 -40.82 -0.29 6.39 16 29 H 0.07 0.94 6.74 -51.92 -0.35 0.59 16 30 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.35 4.43 8.99 -39.29 -0.35 4.08 16 33 H 0.34 3.97 7.58 -39.29 -0.30 3.68 16 34 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 35 H 0.10 1.17 5.89 -51.93 -0.31 0.86 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.08 7.28 -51.93 -0.38 0.70 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -29.06 299.43 -7.13 -36.19 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.81 Total: 14.53 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.24 Total: -9.40 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.35 Total: -48.84 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.06 -7.13 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.393 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds