Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47181 * 84.99530 * 16 14 13 18 18 N 1.46899 * 109.46712 * 324.99738 * 16 14 13 19 19 C 1.52992 * 109.47001 * 204.99835 * 16 14 13 20 20 C 1.53004 * 117.49905 * 253.74450 * 19 16 14 21 21 C 1.53007 * 117.49739 * 185.08851 * 19 16 14 22 22 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 23 23 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 26 26 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 28 28 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 29 29 H 1.09010 * 109.46853 * 60.00093 * 17 16 14 30 30 H 1.08992 * 109.47410 * 179.97438 * 17 16 14 31 31 H 1.09005 * 109.47147 * 300.00310 * 17 16 14 32 32 H 1.00895 * 111.00285 * 299.99781 * 18 16 14 33 33 H 1.00904 * 111.00294 * 63.96009 * 18 16 14 34 34 H 1.08999 * 115.55255 * 39.41835 * 19 16 14 35 35 H 1.09004 * 117.49729 * 0.02562 * 20 19 16 36 36 H 1.08997 * 117.50213 * 145.02047 * 20 19 16 37 37 H 1.08999 * 117.49665 * 214.97706 * 21 19 16 38 38 H 1.09000 * 117.49830 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -0.5191 2.2951 -3.6259 18 7 1.2118 3.9867 -3.2519 19 6 -1.0360 4.3912 -2.3683 20 6 -2.4718 4.0689 -2.7876 21 6 -1.6611 5.1070 -3.5675 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0608 2.9500 28 1 2.2720 2.1231 -1.9978 29 1 -1.3911 1.8141 -3.1826 30 1 -0.8077 2.7827 -4.5570 31 1 0.2452 1.5451 -3.8299 32 1 1.5975 4.6806 -2.6293 33 1 1.9092 3.3045 -3.5097 34 1 -0.8961 4.9685 -1.4544 35 1 -2.6522 3.1067 -3.2670 36 1 -3.2765 4.4345 -2.1497 37 1 -1.9328 6.1552 -3.4422 38 1 -1.3078 4.8283 -4.5602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -40.405139 kcal Electronic energy + Delta-G solvation = -18258.380913 eV Core-core repulsion = 15521.407557 eV Total energy + Delta-G solvation = -2736.973356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34018 -38.73519 -36.82931 -35.22595 -34.03381 -32.47674 -29.87266 -28.93172 -25.96413 -25.03491 -23.14205 -22.74159 -21.31908 -20.13254 -18.85785 -17.66859 -17.46576 -17.01779 -16.60271 -16.03295 -15.95645 -14.91998 -14.79627 -14.57147 -14.35894 -13.59768 -13.41555 -13.23431 -13.18651 -12.93277 -12.90593 -12.72446 -12.18816 -12.11356 -12.03114 -11.88880 -11.62546 -11.36991 -11.08246 -11.06817 -11.00964 -10.57497 -9.71886 -9.50336 -8.18802 -6.36724 1.42040 1.43460 1.54938 1.81798 2.30740 2.52130 3.01869 3.10952 3.56587 3.72336 3.82206 4.08816 4.16956 4.36718 4.44485 4.53697 4.55781 4.71351 4.76400 4.86745 4.95167 5.02096 5.05447 5.16222 5.22472 5.32794 5.38857 5.40465 5.52872 5.59536 5.74598 5.84144 6.01953 6.14095 6.42487 6.72091 6.96646 7.31081 7.55883 8.86562 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.006484 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.628092 B = 4317.135616 C = 4699.649712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.705 5.705 14 C 0.469 3.531 15 O -0.583 6.583 16 C 0.146 3.854 17 C -0.136 4.136 18 N -0.815 5.815 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.136 4.136 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.022 0.978 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.398 0.602 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.347 0.653 33 H 0.349 0.651 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 5.132 -13.251 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.354 5.354 14 C 0.254 3.746 15 O -0.462 6.462 16 C 0.050 3.950 17 C -0.193 4.193 18 N -0.347 5.347 19 C -0.169 4.169 20 C -0.216 4.216 21 C -0.173 4.173 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.233 0.767 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.180 5.250 -12.974 15.300 hybrid contribution 1.694 -0.577 1.524 2.350 sum -4.486 4.673 -11.450 13.155 Atomic orbital electron populations 1.21676 0.97026 0.99100 1.00208 1.21774 0.93704 0.99237 1.01218 1.18334 0.93620 0.89103 0.81429 0.98843 1.21598 0.91374 1.38858 1.06652 0.91022 1.25784 1.03333 0.94369 0.95031 1.70065 1.37039 1.38422 1.09909 0.85319 0.79097 0.77831 0.78218 1.18323 1.21125 1.20471 1.46292 1.15745 1.56148 1.17262 1.22421 0.81831 0.78905 0.91467 1.90638 1.52235 1.60757 1.42570 1.20433 0.92497 0.93358 0.88743 1.21910 1.01248 0.97173 0.98995 1.58931 1.10006 1.18729 1.47051 1.21733 0.94174 1.01377 0.99618 1.23176 0.93000 1.01521 1.03858 1.22926 1.01103 0.97511 0.95770 0.93597 0.93585 0.95861 0.94040 0.91160 0.92626 0.76730 0.91960 0.88566 0.91770 0.83996 0.83616 0.90417 0.87621 0.88986 0.88066 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 14.19 2.24 44.25 0.10 14.28 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -28.55 8.73 25.60 0.22 -28.33 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.43 11.30 21.45 0.24 -52.19 16 9 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.70 -28.15 4.92 -446.09 -2.19 -30.35 16 14 C 0.47 18.10 5.24 87.66 0.46 18.55 16 15 O -0.58 -27.74 13.37 -3.02 -0.04 -27.78 16 16 C 0.15 4.05 0.99 2.78 0.00 4.06 16 17 C -0.14 -3.16 7.38 71.98 0.53 -2.63 16 18 N -0.81 -18.67 8.65 -154.53 -1.34 -20.01 16 19 C -0.15 -4.11 4.69 -10.79 -0.05 -4.16 16 20 C -0.18 -4.13 9.66 30.62 0.30 -3.84 16 21 C -0.14 -2.75 9.84 30.62 0.30 -2.44 16 22 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 23 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 3.90 5.95 -2.39 -0.01 3.88 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.40 13.38 7.02 -92.71 -0.65 12.73 16 29 H 0.06 1.56 6.74 -2.38 -0.02 1.54 16 30 H 0.10 1.79 6.96 -2.39 -0.02 1.78 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.35 8.30 8.99 -89.70 -0.81 7.49 16 33 H 0.35 7.19 7.58 -89.69 -0.68 6.51 16 34 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 35 H 0.11 2.28 5.89 -2.38 -0.01 2.27 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.98 7.28 -2.39 -0.02 1.96 16 Total: -1.00 -64.38 299.43 0.73 -63.65 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.05 Total: 36.90 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.09 Total: -13.99 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.29 Total: -102.55 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.38 0.73 -63.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.240 kcal (2) G-P(sol) polarization free energy of solvation -64.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds