Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08994 * 109.46917 * 55.00686 * 3 2 1 5 5 C 1.50702 * 109.46617 * 175.00315 * 3 2 1 6 6 H 1.08004 * 119.99613 * 120.00363 * 5 3 2 7 7 C 1.37878 * 120.00251 * 300.00056 * 5 3 2 8 8 N 1.31516 * 119.99776 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00039 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47453 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.47217 * 210.00142 * 9 7 5 12 12 H 1.48504 * 109.46942 * 329.99577 * 9 7 5 13 13 N 1.46496 * 109.47228 * 295.00336 * 3 2 1 14 14 C 1.34777 * 119.99875 * 85.00437 * 13 3 2 15 15 O 1.21279 * 120.00162 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00141 * 179.97438 * 14 13 3 17 17 C 1.52993 * 109.47429 * 179.97438 * 16 14 13 18 18 N 1.46906 * 109.47378 * 179.97438 * 17 16 14 19 19 C 1.46898 * 110.99888 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.49773 * 223.62052 * 19 18 17 21 21 C 1.52993 * 59.99970 * 252.51175 * 20 19 18 22 22 H 1.08997 * 109.46664 * 299.99319 * 1 2 3 23 23 H 1.08994 * 109.47037 * 59.99264 * 1 2 3 24 24 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46707 * 240.00358 * 2 1 3 26 26 H 1.08994 * 109.47516 * 120.00961 * 2 1 3 27 27 H 0.97003 * 119.99397 * 179.97438 * 8 7 5 28 28 H 0.96999 * 120.00082 * 264.99418 * 13 3 2 29 29 H 1.09004 * 109.47043 * 59.99777 * 16 14 13 30 30 H 1.09004 * 109.47476 * 299.99851 * 16 14 13 31 31 H 1.09004 * 109.46862 * 60.00067 * 17 16 14 32 32 H 1.09000 * 109.47250 * 300.00090 * 17 16 14 33 33 H 1.00901 * 111.00013 * 303.95621 * 18 17 16 34 34 H 1.09000 * 115.55474 * 9.33061 * 19 18 17 35 35 H 1.09000 * 117.50105 * 0.02562 * 20 19 18 36 36 H 1.09007 * 117.49793 * 145.02017 * 20 19 18 37 37 H 1.08999 * 117.49974 * 252.50975 * 21 20 19 38 38 H 1.09002 * 117.51839 * 107.48434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 5.4541 0.8802 1.3360 9 14 3.0966 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7940 0.2345 3.8750 12 1 1.7880 0.8072 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3667 15 8 -0.3395 2.6320 -0.4342 16 6 0.0365 3.3388 -2.6541 17 6 -1.3827 3.8945 -2.5207 18 7 -1.7710 4.5523 -3.7755 19 6 -3.1310 5.0998 -3.6839 20 6 -4.0614 4.8841 -4.8793 21 6 -3.4835 6.2730 -4.6005 22 1 -0.3632 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 5.8772 0.4823 2.1129 28 1 2.2719 2.1233 -1.9977 29 1 0.0678 2.6147 -3.4684 30 1 0.7279 4.1543 -2.8664 31 1 -1.4143 4.6184 -1.7064 32 1 -2.0738 3.0787 -2.3087 33 1 -1.1086 5.2707 -4.0273 34 1 -3.5774 5.0862 -2.6896 35 1 -3.6644 4.3357 -5.7336 36 1 -5.1201 4.7284 -4.6715 37 1 -4.1620 7.0311 -4.2093 38 1 -2.7061 6.6390 -5.2712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = -18.347067 kcal Electronic energy + Delta-G solvation = -17224.829340 eV Core-core repulsion = 14488.812493 eV Total energy + Delta-G solvation = -2736.016847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.32550 -37.94935 -35.48182 -34.08164 -32.38441 -31.58392 -29.37732 -27.37007 -23.34348 -22.59937 -22.39321 -21.33895 -20.42703 -19.51482 -17.30643 -16.33348 -15.99279 -15.80004 -15.49463 -14.94600 -14.54711 -13.96302 -13.52190 -13.30417 -12.84520 -12.54687 -12.32015 -12.03231 -11.77555 -11.77000 -11.67396 -11.18645 -11.05953 -10.88297 -10.74166 -10.61791 -10.51649 -9.92117 -9.55468 -9.22621 -9.07433 -8.75183 -8.46237 -8.04213 -6.21261 -4.23593 3.23098 3.28137 3.35338 3.40563 3.60291 3.66499 4.27640 4.31843 4.72357 4.78749 4.99959 5.05017 5.12345 5.24074 5.41650 5.43466 5.50989 5.72513 5.73877 5.94828 5.97914 6.00367 6.04462 6.07000 6.20079 6.67134 6.70989 6.86077 6.89148 6.97245 7.18278 7.28605 7.32399 7.53140 8.16401 8.54976 8.76283 8.97598 9.40024 10.90855 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050991 B = 0.004466 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.989946 B = 6267.622054 C = 6534.909533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.701 5.701 14 C 0.504 3.496 15 O -0.554 6.554 16 C -0.141 4.141 17 C 0.078 3.922 18 N -0.663 5.663 19 C 0.018 3.982 20 C -0.170 4.170 21 C -0.195 4.195 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.267 0.733 28 H 0.395 0.605 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.341 0.659 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 6.417 -10.383 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.289 3.711 15 O -0.434 6.434 16 C -0.182 4.182 17 C -0.051 4.051 18 N -0.293 5.293 19 C -0.093 4.093 20 C -0.209 4.209 21 C -0.233 4.233 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.316 5.743 -9.875 18.315 hybrid contribution 0.157 0.235 0.904 0.947 sum -14.159 5.978 -8.971 17.796 Atomic orbital electron populations 1.21870 0.96942 0.98986 1.02258 1.22283 0.94363 0.99996 1.01053 1.19133 0.95540 0.88505 0.83014 0.93403 1.21070 0.88688 1.39734 1.07815 0.90229 1.24844 0.94874 0.95161 0.97701 1.69874 1.08694 1.44574 1.29825 0.86890 0.80937 0.79962 0.80852 1.20236 1.22193 1.18495 1.46172 1.14947 1.55888 1.17903 1.20353 0.82487 0.79149 0.89138 1.90663 1.51539 1.60247 1.40906 1.21600 0.97488 1.01704 0.97360 1.21681 0.95562 0.98697 0.89136 1.60219 1.01858 1.33546 1.33720 1.22360 0.91436 1.00377 0.95104 1.23119 0.98535 0.98534 1.00686 1.23246 1.04271 0.91907 1.03925 0.92938 0.92878 0.95026 0.92318 0.92855 0.92300 0.77181 0.88551 0.89454 0.94097 0.90056 0.84021 0.88146 0.88320 0.88975 0.88845 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.70 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.54 -14.42 9.31 -34.44 -0.32 -14.74 16 6 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 9 Si 0.88 21.83 24.41 -169.99 -4.15 17.68 16 10 H -0.28 -6.60 6.83 56.52 0.39 -6.21 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 13 N -0.70 -13.56 5.02 -54.94 -0.28 -13.84 16 14 C 0.50 9.04 6.40 -10.99 -0.07 8.97 16 15 O -0.55 -11.76 13.12 5.56 0.07 -11.68 16 16 C -0.14 -1.82 5.96 -27.89 -0.17 -1.99 16 17 C 0.08 1.00 4.83 -3.82 -0.02 0.98 16 18 N -0.66 -7.13 6.75 -106.72 -0.72 -7.85 16 19 C 0.02 0.18 6.26 -67.71 -0.42 -0.25 16 20 C -0.17 -1.50 10.46 -26.73 -0.28 -1.78 16 21 C -0.20 -1.58 10.33 -26.74 -0.28 -1.86 16 22 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 23 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 26 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.08 1.16 8.10 -51.93 -0.42 0.73 16 33 H 0.34 3.20 8.68 -39.29 -0.34 2.86 16 34 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 304.25 15.07 4.59 4.59 Total: -1.00 -30.54 304.25 -7.45 -37.99 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.14 Total: 7.61 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.60 Total: -8.80 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.22 Total: -47.39 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.54 -7.45 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.644 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds