Wall clock time and date at job start Mon Mar 30 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08994 * 109.46917 * 55.00686 * 3 2 1 5 5 C 1.50702 * 109.46617 * 175.00315 * 3 2 1 6 6 H 1.08004 * 119.99613 * 120.00363 * 5 3 2 7 7 C 1.37878 * 120.00251 * 300.00056 * 5 3 2 8 8 N 1.31516 * 119.99776 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00039 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47453 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.47217 * 210.00142 * 9 7 5 12 12 H 1.48504 * 109.46942 * 329.99577 * 9 7 5 13 13 N 1.46496 * 109.47228 * 295.00336 * 3 2 1 14 14 C 1.34777 * 119.99875 * 85.00437 * 13 3 2 15 15 O 1.21279 * 120.00162 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00141 * 179.97438 * 14 13 3 17 17 C 1.52993 * 109.47429 * 179.97438 * 16 14 13 18 18 N 1.46906 * 109.47378 * 179.97438 * 17 16 14 19 19 C 1.46898 * 110.99888 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.49773 * 223.62052 * 19 18 17 21 21 C 1.52993 * 59.99970 * 252.51175 * 20 19 18 22 22 H 1.08997 * 109.46664 * 299.99319 * 1 2 3 23 23 H 1.08994 * 109.47037 * 59.99264 * 1 2 3 24 24 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46707 * 240.00358 * 2 1 3 26 26 H 1.08994 * 109.47516 * 120.00961 * 2 1 3 27 27 H 0.97003 * 119.99397 * 179.97438 * 8 7 5 28 28 H 0.96999 * 120.00082 * 264.99418 * 13 3 2 29 29 H 1.09004 * 109.47043 * 59.99777 * 16 14 13 30 30 H 1.09004 * 109.47476 * 299.99851 * 16 14 13 31 31 H 1.09004 * 109.46862 * 60.00067 * 17 16 14 32 32 H 1.09000 * 109.47250 * 300.00090 * 17 16 14 33 33 H 1.00901 * 111.00013 * 303.95621 * 18 17 16 34 34 H 1.09000 * 115.55474 * 9.33061 * 19 18 17 35 35 H 1.09000 * 117.50105 * 0.02562 * 20 19 18 36 36 H 1.09007 * 117.49793 * 145.02017 * 20 19 18 37 37 H 1.08999 * 117.49974 * 252.50975 * 21 20 19 38 38 H 1.09002 * 117.51839 * 107.48434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 5.4541 0.8802 1.3360 9 14 3.0966 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7940 0.2345 3.8750 12 1 1.7880 0.8072 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3667 15 8 -0.3395 2.6320 -0.4342 16 6 0.0365 3.3388 -2.6541 17 6 -1.3827 3.8945 -2.5207 18 7 -1.7710 4.5523 -3.7755 19 6 -3.1310 5.0998 -3.6839 20 6 -4.0614 4.8841 -4.8793 21 6 -3.4835 6.2730 -4.6005 22 1 -0.3632 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 5.8772 0.4823 2.1129 28 1 2.2719 2.1233 -1.9977 29 1 0.0678 2.6147 -3.4684 30 1 0.7279 4.1543 -2.8664 31 1 -1.4143 4.6184 -1.7064 32 1 -2.0738 3.0787 -2.3087 33 1 -1.1086 5.2707 -4.0273 34 1 -3.5774 5.0862 -2.6896 35 1 -3.6644 4.3357 -5.7336 36 1 -5.1201 4.7284 -4.6715 37 1 -4.1620 7.0311 -4.2093 38 1 -2.7061 6.6390 -5.2712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:17 Heat of formation + Delta-G solvation = -41.084989 kcal Electronic energy + Delta-G solvation = -17225.815330 eV Core-core repulsion = 14488.812493 eV Total energy + Delta-G solvation = -2737.002837 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82937 -38.76167 -37.17514 -35.10072 -34.38619 -33.24911 -30.55094 -29.18711 -24.90473 -23.97587 -23.20903 -22.18614 -21.97421 -21.09717 -19.07456 -17.69624 -17.52796 -17.09393 -16.64517 -16.14551 -16.01721 -15.50321 -14.99394 -14.70280 -14.43282 -13.89008 -13.78833 -13.48430 -13.35786 -13.09362 -12.78541 -12.75983 -12.39232 -12.32527 -12.19031 -11.85453 -11.55870 -11.37804 -11.25292 -11.21459 -10.86510 -10.62595 -9.72957 -9.29616 -8.38592 -6.43748 1.26410 1.34460 1.44289 1.84334 2.25543 2.42004 2.93847 2.97331 3.19127 3.90322 4.04502 4.08542 4.14146 4.20280 4.25507 4.32971 4.42423 4.49097 4.66463 4.69635 4.82068 4.86608 4.97261 5.00782 5.04854 5.11821 5.13918 5.24399 5.31991 5.42430 5.52585 5.70287 6.01868 6.15423 6.40938 6.58853 6.93791 7.20060 7.52748 8.76643 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050991 B = 0.004466 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.989946 B = 6267.622054 C = 6534.909533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.502 3.498 15 O -0.587 6.587 16 C -0.126 4.126 17 C 0.088 3.912 18 N -0.659 5.659 19 C -0.004 4.004 20 C -0.170 4.170 21 C -0.180 4.180 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.270 0.730 28 H 0.407 0.593 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.350 0.650 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 6.491 -11.666 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.143 3.857 4 H 0.038 0.962 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.469 6.469 16 C -0.166 4.166 17 C -0.042 4.042 18 N -0.291 5.291 19 C -0.115 4.115 20 C -0.208 4.208 21 C -0.218 4.218 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.242 0.758 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.170 0.830 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.805 5.829 -11.198 20.228 hybrid contribution 0.609 0.293 1.235 1.408 sum -15.196 6.122 -9.963 19.175 Atomic orbital electron populations 1.21755 0.95204 1.00483 1.01595 1.22206 0.95839 0.98572 1.00960 1.18756 0.93064 0.89660 0.84186 0.96185 1.21325 0.90473 1.38423 1.06900 0.92503 1.25555 0.95726 0.95937 0.99884 1.69980 1.10253 1.46236 1.30859 0.86027 0.79243 0.79945 0.78348 1.18574 1.22093 1.18626 1.46030 1.16031 1.56179 1.16883 1.21168 0.81287 0.78204 0.90406 1.90653 1.52324 1.61258 1.42631 1.21530 0.97924 1.02439 0.94679 1.21477 0.95017 0.97971 0.89715 1.60183 1.02560 1.34148 1.32181 1.22424 0.91197 1.02449 0.95400 1.23172 0.98812 0.99111 0.99749 1.23313 1.04159 0.91610 1.02705 0.94613 0.92539 0.92388 0.91291 0.93992 0.92103 0.75795 0.86476 0.86996 0.95554 0.91750 0.83033 0.88889 0.88628 0.88077 0.87688 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.52 71.98 0.61 -4.53 16 2 C -0.14 -5.92 5.11 30.60 0.16 -5.76 16 3 C 0.25 11.64 1.83 44.25 0.08 11.72 16 4 H 0.02 1.07 6.64 -2.39 -0.02 1.05 16 5 C -0.53 -28.98 9.31 25.60 0.24 -28.75 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.62 5.45 84.65 0.46 2.08 16 8 N -0.93 -56.16 13.96 21.45 0.30 -55.86 16 9 Si 0.94 45.06 24.41 68.60 1.67 46.73 16 10 H -0.26 -11.77 6.83 99.48 0.68 -11.09 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.26 -12.53 6.53 99.48 0.65 -11.88 16 13 N -0.70 -26.47 5.02 -446.11 -2.24 -28.71 16 14 C 0.50 17.38 6.40 87.66 0.56 17.94 16 15 O -0.59 -24.65 13.12 -3.03 -0.04 -24.69 16 16 C -0.13 -2.96 5.96 29.84 0.18 -2.78 16 17 C 0.09 2.12 4.83 86.30 0.42 2.54 16 18 N -0.66 -12.87 6.75 -491.57 -3.32 -16.18 16 19 C 0.00 -0.08 6.26 44.92 0.28 0.20 16 20 C -0.17 -2.66 10.46 30.59 0.32 -2.34 16 21 C -0.18 -2.48 10.33 30.59 0.32 -2.16 16 22 H 0.03 1.48 7.85 -2.39 -0.02 1.46 16 23 H 0.06 2.12 5.64 -2.39 -0.01 2.11 16 24 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 26 H 0.04 1.90 3.21 -2.39 -0.01 1.89 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.41 13.36 8.54 -92.71 -0.79 12.56 16 29 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 0.70 8.10 -2.38 -0.02 0.69 16 32 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.35 5.69 8.68 -89.69 -0.78 4.91 16 34 H 0.09 1.83 7.90 -2.39 -0.02 1.81 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -65.70 304.25 -0.60 -66.29 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.60 Total: 24.23 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.62 Total: -11.82 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -5.26 Total: -100.75 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -65.70 -0.60 -66.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.208 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds