Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46836 * 2 1 4 4 H 1.08994 * 109.47767 * 54.99758 * 3 2 1 5 5 C 1.50698 * 109.46889 * 175.00275 * 3 2 1 6 6 H 1.08001 * 120.00449 * 119.99973 * 5 3 2 7 7 C 1.37883 * 119.99736 * 299.99149 * 5 3 2 8 8 N 1.31517 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99964 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47133 * 120.00113 * 9 7 5 12 12 H 1.48496 * 109.47439 * 239.99829 * 9 7 5 13 13 N 1.46500 * 109.46692 * 294.99291 * 3 2 1 14 14 C 1.34774 * 119.99852 * 85.00412 * 13 3 2 15 15 O 1.21279 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00162 * 179.97438 * 14 13 3 17 17 C 1.52995 * 110.42288 * 85.86060 * 16 14 13 18 18 C 1.54906 * 110.37444 * 208.17277 * 16 14 13 19 19 C 1.55138 * 101.65573 * 81.75950 * 18 16 14 20 20 C 1.54318 * 103.01792 * 35.65159 * 19 18 16 21 21 N 1.47446 * 107.23303 * 337.71992 * 20 19 18 22 22 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47166 * 300.00334 * 1 2 3 24 24 H 1.09000 * 109.46861 * 60.00911 * 1 2 3 25 25 H 1.08991 * 109.47531 * 239.99322 * 2 1 3 26 26 H 1.09000 * 109.46861 * 119.99089 * 2 1 3 27 27 H 0.97002 * 119.99880 * 179.97438 * 8 7 5 28 28 H 0.96995 * 120.00416 * 265.00105 * 13 3 2 29 29 H 1.09001 * 109.46975 * 299.14182 * 17 16 14 30 30 H 1.08999 * 109.47314 * 59.13937 * 17 16 14 31 31 H 1.09002 * 109.47344 * 179.14194 * 17 16 14 32 32 H 1.09006 * 110.99331 * 199.85193 * 18 16 14 33 33 H 1.08997 * 110.99309 * 323.66430 * 18 16 14 34 34 H 1.09003 * 110.70420 * 277.27538 * 19 18 16 35 35 H 1.09002 * 110.71153 * 154.03527 * 19 18 16 36 36 H 1.08996 * 109.89415 * 218.31078 * 20 19 18 37 37 H 1.09001 * 109.88767 * 97.12302 * 20 19 18 38 38 H 1.00898 * 110.99657 * 236.73552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3369 2.1730 9 14 6.0048 0.8814 1.3818 10 1 6.5987 1.5474 0.1947 11 1 6.3989 1.6170 2.6102 12 1 6.4970 -0.5173 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6642 -1.3672 15 8 -0.3396 2.6318 -0.4347 16 6 0.0367 3.3383 -2.6547 17 6 -0.5425 2.3166 -3.6352 18 6 -0.9913 4.4637 -2.3786 19 6 -0.0681 5.6314 -1.9418 20 6 1.1797 5.4386 -2.8291 21 7 1.1984 4.0274 -3.2559 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5137 0.8901 27 1 3.8292 -0.0615 2.9496 28 1 2.2719 2.1230 -1.9978 29 1 0.2116 1.5632 -3.8625 30 1 -1.4126 1.8363 -3.1877 31 1 -0.8393 2.8225 -4.5540 32 1 -1.5428 4.7195 -3.2834 33 1 -1.6719 4.1823 -1.5750 34 1 0.1919 5.5432 -0.8869 35 1 -0.5403 6.5927 -2.1444 36 1 2.0798 5.6651 -2.2577 37 1 1.1183 6.0890 -3.7016 38 1 2.0624 3.5802 -2.9883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070619299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = -46.032687 kcal Electronic energy + Delta-G solvation = -18479.959015 eV Core-core repulsion = 15742.741629 eV Total energy + Delta-G solvation = -2737.217385 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09653 -37.26993 -35.05600 -32.51786 -31.51190 -30.79884 -29.84880 -26.99429 -25.53313 -23.36334 -22.09441 -20.98710 -19.71069 -18.91528 -17.73100 -16.13521 -15.62269 -15.29762 -14.75102 -14.27798 -14.20100 -13.38222 -13.33562 -12.85783 -12.72060 -12.35256 -11.98597 -11.74838 -11.69442 -11.47122 -11.29155 -11.08207 -10.99847 -10.86885 -10.75588 -10.60243 -10.33569 -10.19042 -9.66359 -9.37600 -9.07133 -8.53897 -8.21334 -7.85064 -6.15534 -4.25273 3.21056 3.29179 3.31490 3.35597 3.90364 4.26062 4.37106 4.77119 4.84072 5.15718 5.16021 5.31177 5.52052 5.57512 5.80680 5.83677 5.87907 6.00273 6.05416 6.20864 6.31951 6.34160 6.37345 6.44490 6.64095 6.83465 7.02054 7.16663 7.32525 7.34695 7.41682 7.59128 7.70457 7.86848 8.15223 8.62097 8.74262 9.08009 9.42284 10.89650 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.007581 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.790977 B = 3692.333990 C = 4213.557982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.708 5.708 14 C 0.488 3.512 15 O -0.545 6.545 16 C 0.080 3.920 17 C -0.122 4.122 18 C -0.108 4.108 19 C -0.144 4.144 20 C 0.046 3.954 21 N -0.670 5.670 22 H 0.023 0.977 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.099 0.901 27 H 0.264 0.736 28 H 0.385 0.615 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 5.998 -9.775 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.357 5.357 14 C 0.271 3.729 15 O -0.422 6.422 16 C -0.014 4.014 17 C -0.180 4.180 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.083 4.083 21 N -0.303 5.303 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.218 0.782 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.552 5.970 -9.523 12.536 hybrid contribution 1.705 -0.164 0.741 1.866 sum -3.848 5.806 -8.782 11.209 Atomic orbital electron populations 1.21840 0.98359 0.98051 1.01202 1.21929 0.92624 0.99776 1.02288 1.18786 0.94204 0.89207 0.80861 0.93443 1.21262 0.90695 1.39064 1.06277 0.92099 1.24891 0.98630 0.94777 0.95381 1.69907 1.35048 1.37567 1.09344 0.86406 0.84844 0.77822 0.78112 1.19725 1.20905 1.20825 1.46550 1.14800 1.55919 1.18395 1.20900 0.82941 0.79620 0.89430 1.90647 1.51283 1.59910 1.40366 1.22143 0.92300 0.95291 0.91627 1.21597 1.00632 0.97619 0.98157 1.22627 0.96986 0.92981 1.02024 1.22797 0.96175 0.98988 1.00270 1.22599 0.97750 0.90084 0.97907 1.62021 1.05264 1.02644 1.60410 0.95828 0.93235 0.94248 0.95016 0.88292 0.92600 0.78166 0.92142 0.91931 0.91361 0.90540 0.89312 0.91106 0.90833 0.92817 0.90697 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.71 -14.48 4.78 -54.94 -0.26 -14.74 16 14 C 0.49 9.54 5.08 -10.99 -0.06 9.49 16 15 O -0.54 -12.50 12.99 5.56 0.07 -12.43 16 16 C 0.08 1.23 1.09 -131.23 -0.14 1.09 16 17 C -0.12 -1.65 8.91 37.16 0.33 -1.32 16 18 C -0.11 -1.51 5.86 -24.59 -0.14 -1.65 16 19 C -0.14 -1.91 6.72 -24.91 -0.17 -2.07 16 20 C 0.05 0.59 7.58 -2.83 -0.02 0.57 16 21 N -0.67 -9.36 6.91 -98.35 -0.68 -10.04 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 24 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.38 7.01 6.76 -40.82 -0.28 6.74 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.09 1.38 7.22 -51.93 -0.37 1.00 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.34 4.86 6.53 -39.29 -0.26 4.61 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -28.79 297.19 -7.44 -36.23 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.07 Total: 10.85 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.58 Total: -5.88 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.32 Total: -48.71 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.79 -7.44 -36.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.803 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds