Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46836 * 2 1 4 4 H 1.08994 * 109.47767 * 54.99758 * 3 2 1 5 5 C 1.50698 * 109.46889 * 175.00275 * 3 2 1 6 6 H 1.08001 * 120.00449 * 119.99973 * 5 3 2 7 7 C 1.37883 * 119.99736 * 299.99149 * 5 3 2 8 8 N 1.31517 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99964 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47133 * 120.00113 * 9 7 5 12 12 H 1.48496 * 109.47439 * 239.99829 * 9 7 5 13 13 N 1.46500 * 109.46692 * 294.99291 * 3 2 1 14 14 C 1.34774 * 119.99852 * 85.00412 * 13 3 2 15 15 O 1.21279 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00162 * 179.97438 * 14 13 3 17 17 C 1.52995 * 110.42288 * 85.86060 * 16 14 13 18 18 C 1.54906 * 110.37444 * 208.17277 * 16 14 13 19 19 C 1.55138 * 101.65573 * 81.75950 * 18 16 14 20 20 C 1.54318 * 103.01792 * 35.65159 * 19 18 16 21 21 N 1.47446 * 107.23303 * 337.71992 * 20 19 18 22 22 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47166 * 300.00334 * 1 2 3 24 24 H 1.09000 * 109.46861 * 60.00911 * 1 2 3 25 25 H 1.08991 * 109.47531 * 239.99322 * 2 1 3 26 26 H 1.09000 * 109.46861 * 119.99089 * 2 1 3 27 27 H 0.97002 * 119.99880 * 179.97438 * 8 7 5 28 28 H 0.96995 * 120.00416 * 265.00105 * 13 3 2 29 29 H 1.09001 * 109.46975 * 299.14182 * 17 16 14 30 30 H 1.08999 * 109.47314 * 59.13937 * 17 16 14 31 31 H 1.09002 * 109.47344 * 179.14194 * 17 16 14 32 32 H 1.09006 * 110.99331 * 199.85193 * 18 16 14 33 33 H 1.08997 * 110.99309 * 323.66430 * 18 16 14 34 34 H 1.09003 * 110.70420 * 277.27538 * 19 18 16 35 35 H 1.09002 * 110.71153 * 154.03527 * 19 18 16 36 36 H 1.08996 * 109.89415 * 218.31078 * 20 19 18 37 37 H 1.09001 * 109.88767 * 97.12302 * 20 19 18 38 38 H 1.00898 * 110.99657 * 236.73552 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3369 2.1730 9 14 6.0048 0.8814 1.3818 10 1 6.5987 1.5474 0.1947 11 1 6.3989 1.6170 2.6102 12 1 6.4970 -0.5173 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6642 -1.3672 15 8 -0.3396 2.6318 -0.4347 16 6 0.0367 3.3383 -2.6547 17 6 -0.5425 2.3166 -3.6352 18 6 -0.9913 4.4637 -2.3786 19 6 -0.0681 5.6314 -1.9418 20 6 1.1797 5.4386 -2.8291 21 7 1.1984 4.0274 -3.2559 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5137 0.8901 27 1 3.8292 -0.0615 2.9496 28 1 2.2719 2.1230 -1.9978 29 1 0.2116 1.5632 -3.8625 30 1 -1.4126 1.8363 -3.1877 31 1 -0.8393 2.8225 -4.5540 32 1 -1.5428 4.7195 -3.2834 33 1 -1.6719 4.1823 -1.5750 34 1 0.1919 5.5432 -0.8869 35 1 -0.5403 6.5927 -2.1444 36 1 2.0798 5.6651 -2.2577 37 1 1.1183 6.0890 -3.7016 38 1 2.0624 3.5802 -2.9883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070619299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = -66.342011 kcal Electronic energy + Delta-G solvation = -18480.839693 eV Core-core repulsion = 15742.741629 eV Total energy + Delta-G solvation = -2738.098064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53933 -38.70326 -36.90163 -34.38780 -33.05787 -32.26261 -31.04652 -28.94351 -26.63262 -25.24744 -23.68203 -22.08627 -21.53572 -20.50438 -19.14931 -17.96449 -17.29432 -16.70468 -16.39947 -15.81040 -15.70782 -14.89641 -14.67284 -14.53262 -14.07182 -13.82811 -13.51738 -13.25956 -13.09937 -13.01918 -12.88785 -12.75806 -12.70906 -12.23527 -12.13210 -12.10193 -11.82978 -11.74370 -11.60901 -11.07566 -10.87295 -10.56740 -9.72042 -9.44170 -8.18918 -6.36646 1.41740 1.43194 1.54736 1.78786 2.30102 2.51726 3.09775 3.12010 3.63242 3.73339 3.94781 4.11773 4.33194 4.45258 4.49573 4.54235 4.72452 4.75999 4.77148 4.87480 4.95203 4.98820 5.02952 5.09696 5.21738 5.27105 5.29566 5.40388 5.52432 5.58108 5.66646 5.76987 5.90230 6.13331 6.18308 6.71534 6.93147 7.30142 7.51152 8.86399 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.007581 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.790977 B = 3692.333990 C = 4213.557982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.704 5.704 14 C 0.484 3.516 15 O -0.583 6.583 16 C 0.086 3.914 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.143 4.143 20 C 0.043 3.957 21 N -0.662 5.662 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.398 0.602 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 6.728 -12.153 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.354 5.354 14 C 0.269 3.731 15 O -0.463 6.463 16 C -0.008 4.008 17 C -0.177 4.177 18 C -0.145 4.145 19 C -0.181 4.181 20 C -0.086 4.086 21 N -0.294 5.294 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.012 6.716 -11.944 14.590 hybrid contribution 1.493 -0.351 1.504 2.148 sum -3.519 6.366 -10.440 12.724 Atomic orbital electron populations 1.21677 0.96976 0.99188 1.00208 1.21783 0.93778 0.99155 1.01296 1.18351 0.93662 0.89138 0.81168 0.98707 1.21595 0.91363 1.38960 1.06676 0.91091 1.25773 1.03318 0.94356 0.95024 1.70057 1.37003 1.38314 1.09886 0.85330 0.79130 0.77876 0.78207 1.18382 1.21078 1.20405 1.46317 1.15743 1.56001 1.17369 1.21832 0.81851 0.78704 0.90678 1.90631 1.52247 1.61137 1.42255 1.22195 0.93303 0.95907 0.89413 1.21615 1.00301 0.97262 0.98496 1.22675 0.96573 0.92567 1.02692 1.22801 0.96575 1.00304 0.98459 1.22741 0.97240 0.89746 0.98830 1.62145 1.04615 1.03080 1.59557 0.93498 0.95728 0.93668 0.94041 0.91012 0.92599 0.76631 0.92208 0.92368 0.88734 0.87462 0.91402 0.94311 0.87928 0.93269 0.87992 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 3 C 0.28 14.37 2.24 44.25 0.10 14.47 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.91 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 13 N -0.70 -29.01 4.78 -446.11 -2.13 -31.14 16 14 C 0.48 19.03 5.08 87.66 0.45 19.48 16 15 O -0.58 -27.65 12.99 -3.03 -0.04 -27.69 16 16 C 0.09 2.49 1.09 3.25 0.00 2.49 16 17 C -0.12 -2.91 8.91 71.98 0.64 -2.27 16 18 C -0.11 -2.79 5.86 31.98 0.19 -2.60 16 19 C -0.14 -3.55 6.72 31.77 0.21 -3.34 16 20 C 0.04 1.00 7.58 86.65 0.66 1.66 16 21 N -0.66 -16.88 6.91 -465.08 -3.21 -20.09 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 24 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.40 14.23 6.76 -92.71 -0.63 13.60 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.16 8.06 -2.38 -0.02 2.14 16 33 H 0.07 2.08 7.22 -2.39 -0.02 2.06 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.34 9.02 6.53 -89.70 -0.59 8.43 16 Total: -1.00 -63.67 297.19 0.42 -63.25 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.16 Total: 32.03 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 3.70 Total: -8.29 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.11 Total: -103.28 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.69 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -63.67 0.42 -63.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070619299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -63.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds