Wall clock time and date at job start Mon Mar 30 2020 04:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 8 8 N 1.46906 * 109.47053 * 300.00120 * 7 6 5 9 9 C 1.50699 * 109.47389 * 179.97438 * 7 6 5 10 10 O 1.21284 * 119.99866 * 264.99690 * 9 7 6 11 11 N 1.34782 * 119.99888 * 85.00051 * 9 7 6 12 12 C 1.46500 * 119.99783 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47000 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99815 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46811 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47112 * 119.99940 * 17 15 13 20 20 H 1.48494 * 109.47444 * 240.00314 * 17 15 13 21 21 C 1.52997 * 109.46978 * 59.99726 * 7 6 5 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 28 28 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47407 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 31 31 H 1.00900 * 110.99744 * 299.99884 * 8 7 6 32 32 H 1.00897 * 111.00162 * 63.94899 * 8 7 6 33 33 H 0.96997 * 119.99943 * 359.97438 * 11 9 7 34 34 H 1.09009 * 109.47165 * 300.00253 * 12 11 9 35 35 H 1.08995 * 109.47305 * 59.99598 * 12 11 9 36 36 H 0.97010 * 120.00204 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47140 * 180.02562 * 21 7 6 38 38 H 1.09002 * 109.47497 * 60.00450 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 7 4.0597 0.6626 1.2498 9 6 4.0708 -1.4334 2.4800 10 8 3.3746 -2.2619 3.0275 11 7 5.2928 -1.1486 2.9721 12 6 5.7804 -1.8403 4.1679 13 6 7.1623 -1.3439 4.5070 14 1 7.6307 -0.5891 3.8928 15 6 7.8286 -1.8535 5.6012 16 7 7.2584 -2.7731 6.3487 17 14 9.5418 -1.2388 6.0211 18 1 9.9556 -0.2120 5.0313 19 1 9.5338 -0.6407 7.3803 20 1 10.4978 -2.3746 5.9857 21 6 2.0395 -0.7216 1.2492 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9336 0.3056 -1.2488 28 1 3.9333 -1.2361 -2.1387 29 1 5.1694 -1.4436 0.0007 30 1 3.7157 -2.4711 0.0001 31 1 5.0684 0.6891 1.2500 32 1 3.6846 1.1791 0.4684 33 1 5.8498 -0.4862 2.5340 34 1 5.1076 -1.6416 5.0023 35 1 5.8164 -2.9129 3.9779 36 1 7.7273 -3.1319 7.1184 37 1 1.6762 -0.2074 2.1390 38 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070903721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:48 Heat of formation + Delta-G solvation = -66.956981 kcal Electronic energy + Delta-G solvation = -17852.658148 eV Core-core repulsion = 15114.533418 eV Total energy + Delta-G solvation = -2738.124731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.21514 -37.71505 -34.28841 -33.76630 -32.17542 -31.80345 -28.62739 -27.31891 -26.45282 -23.75445 -22.12902 -21.58910 -19.78010 -18.76161 -17.31015 -16.05535 -15.71017 -15.34177 -14.85760 -14.72747 -14.27759 -13.98338 -13.81989 -13.41941 -13.03592 -12.59568 -12.43320 -12.04500 -11.87204 -11.74831 -11.70754 -11.44502 -11.10467 -10.93691 -10.89082 -10.52345 -10.49872 -10.29925 -10.20246 -9.35730 -9.04777 -8.71184 -8.54453 -7.82716 -6.14450 -4.21068 3.24792 3.31754 3.34872 3.37062 4.05711 4.37224 4.57746 4.63932 4.67213 4.78696 5.04099 5.08168 5.21779 5.32259 5.35309 5.44996 5.52522 5.59397 5.68976 5.78044 5.86127 5.92135 6.01756 6.10774 6.14803 6.23208 6.37440 6.48960 7.10691 7.33414 7.44222 7.48553 7.55437 7.69963 7.99885 8.67745 8.81055 9.14283 9.45594 10.95865 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046744 B = 0.005058 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.859509 B = 5534.019652 C = 5767.548013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.145 4.145 7 C 0.106 3.894 8 N -0.831 5.831 9 C 0.515 3.485 10 O -0.556 6.556 11 N -0.704 5.704 12 C 0.248 3.752 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.086 4.086 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.341 0.659 32 H 0.343 0.657 33 H 0.388 0.612 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 6.569 -15.880 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.185 4.185 7 C 0.010 3.990 8 N -0.365 5.365 9 C 0.298 3.702 10 O -0.435 6.435 11 N -0.351 5.351 12 C 0.128 3.872 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.124 4.124 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.221 0.779 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.891 5.912 -14.572 18.065 hybrid contribution 1.751 0.310 -0.754 1.932 sum -7.139 6.222 -15.326 18.016 Atomic orbital electron populations 1.21796 0.95101 1.01867 1.01493 1.21176 0.95687 0.99636 0.94737 0.90968 1.21646 0.95162 1.01077 0.97534 1.21526 0.96016 1.00409 0.97584 1.22260 1.00920 1.00946 0.94374 1.20994 0.96698 0.88329 0.92982 1.58950 1.13843 1.12074 1.51648 1.20158 0.82254 0.82852 0.84913 1.90651 1.56888 1.35220 1.60730 1.46412 1.16098 1.41799 1.30819 1.19112 0.94033 0.92596 0.81501 1.21257 1.00467 1.23739 1.12443 0.91903 1.24951 0.98504 0.94795 0.95780 1.69990 1.37905 1.27552 1.16891 0.86366 0.83526 0.78641 0.78401 1.19641 1.20791 1.20846 1.21405 0.91650 1.01698 0.97694 0.92507 0.92943 0.92654 0.91738 0.92068 0.92164 0.91629 0.91443 0.90741 0.84534 0.84142 0.77906 0.95531 0.95649 0.92540 0.90933 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.19 37.16 0.34 -1.01 16 2 C -0.09 -0.97 2.46 -90.62 -0.22 -1.19 16 3 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 4 C -0.12 -1.09 5.20 -26.74 -0.14 -1.22 16 5 C -0.12 -1.12 5.66 -26.73 -0.15 -1.27 16 6 C -0.15 -1.84 4.87 -26.73 -0.13 -1.97 16 7 C 0.11 1.57 0.88 -132.75 -0.12 1.45 16 8 N -0.83 -10.51 8.61 -0.19 0.00 -10.51 16 9 C 0.51 10.67 6.71 -10.98 -0.07 10.60 16 10 O -0.56 -13.82 16.09 5.55 0.09 -13.73 16 11 N -0.70 -15.25 5.45 -61.47 -0.33 -15.58 16 12 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 13 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.09 -1.21 3.73 -26.73 -0.10 -1.31 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.34 4.06 7.44 -39.29 -0.29 3.77 16 32 H 0.34 3.50 5.44 -39.29 -0.21 3.28 16 33 H 0.39 7.27 6.70 -40.82 -0.27 7.00 16 34 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -31.86 299.42 -7.12 -38.98 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.06 Total: 8.74 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.04 Total: -2.73 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.40 Total: -51.77 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.86 -7.12 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070903721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.978 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds