Wall clock time and date at job start Mon Mar 30 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 8 8 N 1.46906 * 109.47053 * 300.00120 * 7 6 5 9 9 C 1.50699 * 109.47389 * 179.97438 * 7 6 5 10 10 O 1.21284 * 119.99866 * 264.99690 * 9 7 6 11 11 N 1.34782 * 119.99888 * 85.00051 * 9 7 6 12 12 C 1.46500 * 119.99783 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47000 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99815 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46811 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47112 * 119.99940 * 17 15 13 20 20 H 1.48494 * 109.47444 * 240.00314 * 17 15 13 21 21 C 1.52997 * 109.46978 * 59.99726 * 7 6 5 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 28 28 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47407 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 31 31 H 1.00900 * 110.99744 * 299.99884 * 8 7 6 32 32 H 1.00897 * 111.00162 * 63.94899 * 8 7 6 33 33 H 0.96997 * 119.99943 * 359.97438 * 11 9 7 34 34 H 1.09009 * 109.47165 * 300.00253 * 12 11 9 35 35 H 1.08995 * 109.47305 * 59.99598 * 12 11 9 36 36 H 0.97010 * 120.00204 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47140 * 180.02562 * 21 7 6 38 38 H 1.09002 * 109.47497 * 60.00450 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 7 4.0597 0.6626 1.2498 9 6 4.0708 -1.4334 2.4800 10 8 3.3746 -2.2619 3.0275 11 7 5.2928 -1.1486 2.9721 12 6 5.7804 -1.8403 4.1679 13 6 7.1623 -1.3439 4.5070 14 1 7.6307 -0.5891 3.8928 15 6 7.8286 -1.8535 5.6012 16 7 7.2584 -2.7731 6.3487 17 14 9.5418 -1.2388 6.0211 18 1 9.9556 -0.2120 5.0313 19 1 9.5338 -0.6407 7.3803 20 1 10.4978 -2.3746 5.9857 21 6 2.0395 -0.7216 1.2492 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6766 -1.7489 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9336 0.3056 -1.2488 28 1 3.9333 -1.2361 -2.1387 29 1 5.1694 -1.4436 0.0007 30 1 3.7157 -2.4711 0.0001 31 1 5.0684 0.6891 1.2500 32 1 3.6846 1.1791 0.4684 33 1 5.8498 -0.4862 2.5340 34 1 5.1076 -1.6416 5.0023 35 1 5.8164 -2.9129 3.9779 36 1 7.7273 -3.1319 7.1184 37 1 1.6762 -0.2074 2.1390 38 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070903721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:47 Heat of formation + Delta-G solvation = -90.915887 kcal Electronic energy + Delta-G solvation = -17853.697084 eV Core-core repulsion = 15114.533418 eV Total energy + Delta-G solvation = -2739.163667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55842 -39.17301 -36.23165 -35.04452 -34.08137 -32.73495 -29.79384 -29.32988 -27.35789 -25.46639 -23.65245 -22.66264 -21.23005 -20.01069 -18.94341 -17.80003 -17.32934 -16.66003 -16.44095 -16.01119 -15.53340 -15.41152 -15.05111 -14.75716 -14.36293 -14.09362 -13.83951 -13.54586 -13.36618 -12.92894 -12.91729 -12.76121 -12.73824 -12.39542 -12.23222 -11.95568 -11.55019 -11.47708 -11.38337 -11.10788 -10.82933 -10.61637 -9.86436 -9.69643 -8.30281 -6.47378 1.42548 1.44163 1.57688 1.69514 2.30566 2.53906 3.04600 3.42997 3.64546 3.71159 3.75490 4.06275 4.13121 4.28312 4.42410 4.46335 4.57310 4.72005 4.80949 4.95208 5.02885 5.04998 5.08844 5.14269 5.20229 5.22119 5.29803 5.35100 5.41507 5.47064 5.57792 5.65654 5.82804 6.05496 6.53556 6.63514 6.88035 7.21614 7.44251 8.82367 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046744 B = 0.005058 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.859509 B = 5534.019652 C = 5767.548013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.087 0.913 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.143 4.143 7 C 0.121 3.879 8 N -0.831 5.831 9 C 0.505 3.495 10 O -0.605 6.605 11 N -0.697 5.697 12 C 0.265 3.735 13 C -0.554 4.554 14 H 0.084 0.916 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.085 4.085 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.348 0.652 32 H 0.363 0.637 33 H 0.405 0.595 34 H -0.017 1.017 35 H -0.014 1.014 36 H 0.269 0.731 37 H 0.049 0.951 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 8.930 -18.396 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.183 4.183 7 C 0.025 3.975 8 N -0.369 5.369 9 C 0.292 3.708 10 O -0.486 6.486 11 N -0.346 5.346 12 C 0.142 3.858 13 C -0.592 4.592 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.810 3.190 18 H -0.175 1.175 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.124 4.124 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.241 0.759 34 H 0.001 0.999 35 H 0.004 0.996 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.787 8.318 -17.147 20.588 hybrid contribution 1.329 -0.473 0.062 1.412 sum -6.458 7.845 -17.085 19.879 Atomic orbital electron populations 1.21798 0.94293 1.01813 1.02331 1.21149 0.96362 0.99778 0.93077 0.89528 1.21661 0.94971 1.00836 0.97770 1.21528 0.96077 1.01166 0.95968 1.22265 1.01041 1.00168 0.94802 1.20771 0.96981 0.89220 0.90516 1.58840 1.14488 1.10553 1.52988 1.21391 0.81173 0.82207 0.86074 1.90617 1.57993 1.37434 1.62593 1.46159 1.16982 1.41944 1.29512 1.18561 0.93952 0.91035 0.82258 1.21623 1.00317 1.24214 1.13033 0.89759 1.26096 1.03501 0.94629 0.95407 1.70155 1.40236 1.29087 1.17604 0.85075 0.77112 0.78404 0.78395 1.17482 1.20479 1.20370 1.21398 0.91060 1.00788 0.99134 0.93135 0.90629 0.93241 0.92592 0.89299 0.90154 0.89942 0.91250 0.92605 0.83766 0.81877 0.75869 0.99875 0.99556 0.92239 0.93246 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.19 71.98 0.66 -1.76 16 2 C -0.09 -1.57 2.46 -10.79 -0.03 -1.59 16 3 H 0.09 1.38 6.57 -2.39 -0.02 1.37 16 4 C -0.12 -1.76 5.20 30.59 0.16 -1.60 16 5 C -0.11 -1.70 5.66 30.59 0.17 -1.53 16 6 C -0.14 -3.44 4.87 30.60 0.15 -3.29 16 7 C 0.12 3.55 0.88 2.78 0.00 3.55 16 8 N -0.83 -19.34 8.61 -154.52 -1.33 -20.67 16 9 C 0.50 21.79 6.71 87.66 0.59 22.38 16 10 O -0.60 -32.09 16.09 -3.04 -0.05 -32.14 16 11 N -0.70 -31.09 5.45 -466.78 -2.54 -33.64 16 12 C 0.26 15.14 5.43 85.63 0.46 15.60 16 13 C -0.55 -30.81 9.28 25.60 0.24 -30.57 16 14 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 15 C 0.00 0.17 5.46 84.65 0.46 0.64 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 18 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 21 C -0.09 -2.41 3.73 30.59 0.11 -2.30 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 0.97 6.76 -2.39 -0.02 0.95 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.35 7.44 7.44 -89.69 -0.67 6.77 16 32 H 0.36 6.11 5.44 -89.70 -0.49 5.62 16 33 H 0.41 15.03 6.70 -92.71 -0.62 14.41 16 34 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.75 7.87 -2.39 -0.02 1.73 16 Total: -1.00 -73.35 299.42 0.66 -72.69 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.71 Total: 26.41 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 2.99 Total: -0.48 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.59 Total: -111.28 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.05 Total: -32.14 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.35 0.66 -72.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070903721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.225 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds