Wall clock time and date at job start Mon Mar 30 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 N 1.46505 * 109.46829 * 179.97438 * 3 2 1 5 5 C 1.34768 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00254 * 355.16827 * 5 4 3 7 7 N 1.34777 * 120.00149 * 175.16837 * 5 4 3 8 8 C 1.37192 * 120.00062 * 185.62285 * 7 5 4 9 9 H 1.08003 * 119.99993 * 224.32144 * 8 7 5 10 10 C 1.38875 * 120.00094 * 44.32807 * 8 7 5 11 11 N 1.31474 * 119.99960 * 6.00084 * 10 8 7 12 12 Si 1.86803 * 119.99936 * 185.99900 * 10 8 7 13 13 H 1.48492 * 109.47260 * 89.99896 * 12 10 8 14 14 H 1.48503 * 109.46945 * 209.99928 * 12 10 8 15 15 H 1.48497 * 109.47053 * 329.99826 * 12 10 8 16 16 C 1.46499 * 119.99784 * 5.34521 * 7 5 4 17 17 C 1.54268 * 110.03333 * 231.96136 * 16 7 5 18 18 C 1.54968 * 104.15865 * 217.13954 * 17 16 7 19 19 C 1.54886 * 102.77999 * 37.88434 * 18 17 16 20 20 C 1.53876 * 110.03143 * 114.74395 * 16 7 5 21 21 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47604 * 299.99748 * 1 2 3 23 23 H 1.09007 * 109.47548 * 60.00144 * 1 2 3 24 24 H 1.08992 * 109.46863 * 240.00268 * 2 1 3 25 25 H 1.08997 * 109.47010 * 119.99886 * 2 1 3 26 26 H 1.09001 * 109.46960 * 60.00549 * 3 2 1 27 27 H 1.08997 * 109.47237 * 299.99748 * 3 2 1 28 28 H 0.96998 * 120.00065 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99698 * 184.99938 * 11 10 8 30 30 H 1.09000 * 110.01931 * 353.35222 * 16 7 5 31 31 H 1.08996 * 110.48503 * 335.78303 * 17 16 7 32 32 H 1.09001 * 110.48520 * 98.42877 * 17 16 7 33 33 H 1.09004 * 110.71664 * 279.57301 * 18 17 16 34 34 H 1.08998 * 110.92181 * 156.29646 * 18 17 16 35 35 H 1.08996 * 110.48775 * 203.40613 * 19 18 17 36 36 H 1.08999 * 110.59563 * 80.81719 * 19 18 17 37 37 H 1.08999 * 110.03298 * 238.56920 * 20 16 7 38 38 H 1.09001 * 110.03144 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1787 2.6097 0.0012 6 8 3.5741 3.6608 -0.0874 7 7 5.5229 2.6118 0.1001 8 6 6.2002 3.7992 0.2170 9 1 7.0945 3.9701 -0.3639 10 6 5.7361 4.7811 1.0824 11 7 4.7181 4.5304 1.8758 12 14 6.5581 6.4582 1.1192 13 1 5.8941 7.3565 0.1409 14 1 6.4409 7.0371 2.4817 15 1 7.9929 6.3140 0.7644 16 6 6.2601 1.3459 0.0889 17 6 7.2115 1.2777 1.3014 18 6 8.4737 0.5650 0.7532 19 6 8.6002 1.1446 -0.6776 20 6 7.1425 1.2610 -1.1689 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9899 0.6025 0.0013 29 1 4.3476 5.2371 2.4274 30 1 5.5634 0.5081 0.1135 31 1 7.4603 2.2807 1.6480 32 1 6.7628 0.6953 2.1061 33 1 8.3238 -0.5142 0.7209 34 1 9.3513 0.8140 1.3498 35 1 9.1648 0.4651 -1.3159 36 1 9.0740 2.1259 -0.6533 37 1 6.8745 0.3815 -1.7543 38 1 7.0218 2.1615 -1.7711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080213840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:18 Heat of formation + Delta-G solvation = -27.018091 kcal Electronic energy + Delta-G solvation = -18296.914272 eV Core-core repulsion = 15560.521421 eV Total energy + Delta-G solvation = -2736.392850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.97992 -36.95469 -35.04252 -33.06468 -32.03749 -30.74861 -28.00526 -26.76688 -25.95782 -23.83634 -21.24066 -20.08719 -19.98819 -19.04442 -17.46931 -15.90518 -15.20115 -15.08023 -14.80949 -14.38430 -14.00401 -13.31239 -13.24427 -12.80169 -12.66711 -12.19113 -12.05386 -11.70408 -11.22818 -11.02326 -10.93982 -10.76014 -10.75417 -10.55970 -10.49212 -10.41867 -10.35625 -10.12880 -10.02809 -9.70562 -8.64223 -8.10207 -7.74967 -6.92668 -5.84313 -3.68025 3.39584 3.44854 3.46674 4.15577 4.56132 4.98930 5.20201 5.21435 5.23076 5.30138 5.35407 5.51819 5.59879 5.70402 5.91940 5.95387 5.97213 6.00569 6.12645 6.18243 6.24398 6.28252 6.35850 6.45909 6.47858 6.55790 6.61610 6.66606 6.84166 7.02167 7.25105 7.72983 7.79739 8.06714 8.71826 9.34497 9.63724 9.94923 10.72446 11.20674 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.009965 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.027342 B = 2809.061104 C = 4086.352728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.147 3.853 4 N -0.771 5.771 5 C 0.685 3.315 6 O -0.568 6.568 7 N -0.475 5.475 8 C -0.317 4.317 9 H 0.074 0.926 10 C 0.058 3.942 11 N -0.836 5.836 12 Si 0.906 3.094 13 H -0.281 1.281 14 H -0.289 1.289 15 H -0.274 1.274 16 C 0.139 3.861 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.133 4.133 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.378 0.622 29 H 0.258 0.742 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -10.746 -2.535 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.022 3.978 4 N -0.433 5.433 5 C 0.388 3.612 6 O -0.443 6.443 7 N -0.201 5.201 8 C -0.445 4.445 9 H 0.092 0.908 10 C -0.151 4.151 11 N -0.470 5.470 12 Si 0.734 3.266 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.199 1.199 16 C 0.033 3.967 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.172 4.172 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.213 0.787 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.123 -9.841 -2.389 10.127 hybrid contribution 0.503 0.415 0.152 0.670 sum 0.626 -9.426 -2.238 9.708 Atomic orbital electron populations 1.21665 0.95320 1.01296 1.02173 1.21727 0.96227 0.97314 1.01950 1.20876 0.80983 0.94795 1.01191 1.45419 1.05616 1.07755 1.84513 1.15981 0.82601 0.82705 0.79918 1.90719 1.67101 1.30291 1.56193 1.42563 1.02097 1.03873 1.71597 1.18640 1.10802 0.92579 1.22472 0.90816 1.25286 0.96325 0.99395 0.94105 1.69899 1.22272 1.32249 1.22599 0.86296 0.79219 0.84059 0.77050 1.20773 1.21471 1.19934 1.21528 0.93185 0.88217 0.93745 1.22650 0.94406 1.02136 0.97127 1.22457 0.98409 0.98825 0.96402 1.22253 0.96764 1.00466 0.95983 1.22534 0.94930 1.01275 0.98427 0.92853 0.92501 0.92589 0.91955 0.91862 0.92819 0.93065 0.78737 0.93152 0.92508 0.88907 0.93092 0.92600 0.92370 0.92984 0.91647 0.93086 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.79 6.05 -26.73 -0.16 -1.95 16 3 C 0.15 2.72 5.68 -4.04 -0.02 2.70 16 4 N -0.77 -16.30 5.46 -65.22 -0.36 -16.66 16 5 C 0.68 18.28 7.36 -86.93 -0.64 17.65 16 6 O -0.57 -17.78 13.97 5.29 0.07 -17.71 16 7 N -0.47 -12.04 2.44 -111.85 -0.27 -12.31 16 8 C -0.32 -8.74 7.22 -14.92 -0.11 -8.85 16 9 H 0.07 1.98 7.52 -52.48 -0.39 1.58 16 10 C 0.06 1.66 4.77 -17.47 -0.08 1.58 16 11 N -0.84 -25.57 11.04 55.49 0.61 -24.95 16 12 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.14 2.77 3.28 -66.81 -0.22 2.56 16 17 C -0.12 -2.36 6.40 -25.03 -0.16 -2.52 16 18 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 19 C -0.12 -1.80 6.83 -25.07 -0.17 -1.98 16 20 C -0.13 -2.33 6.28 -25.61 -0.16 -2.49 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.38 6.88 5.88 -40.82 -0.24 6.64 16 29 H 0.26 7.69 8.32 -40.82 -0.34 7.35 16 30 H 0.06 1.03 5.51 -51.93 -0.29 0.74 16 31 H 0.09 2.07 6.79 -51.93 -0.35 1.71 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.46 7.38 -51.93 -0.38 1.07 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -33.49 301.74 -8.24 -41.72 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.29 Total: 4.73 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.53 Total: 3.37 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.02 Total: -53.92 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.07 Total: -17.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.49 -8.24 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.706 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds