Wall clock time and date at job start Mon Mar 30 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 N 1.46505 * 109.46829 * 179.97438 * 3 2 1 5 5 C 1.34768 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00254 * 355.16827 * 5 4 3 7 7 N 1.34777 * 120.00149 * 175.16837 * 5 4 3 8 8 C 1.37192 * 120.00062 * 185.62285 * 7 5 4 9 9 H 1.08003 * 119.99993 * 224.32144 * 8 7 5 10 10 C 1.38875 * 120.00094 * 44.32807 * 8 7 5 11 11 N 1.31474 * 119.99960 * 6.00084 * 10 8 7 12 12 Si 1.86803 * 119.99936 * 185.99900 * 10 8 7 13 13 H 1.48492 * 109.47260 * 89.99896 * 12 10 8 14 14 H 1.48503 * 109.46945 * 209.99928 * 12 10 8 15 15 H 1.48497 * 109.47053 * 329.99826 * 12 10 8 16 16 C 1.46499 * 119.99784 * 5.34521 * 7 5 4 17 17 C 1.54268 * 110.03333 * 231.96136 * 16 7 5 18 18 C 1.54968 * 104.15865 * 217.13954 * 17 16 7 19 19 C 1.54886 * 102.77999 * 37.88434 * 18 17 16 20 20 C 1.53876 * 110.03143 * 114.74395 * 16 7 5 21 21 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47604 * 299.99748 * 1 2 3 23 23 H 1.09007 * 109.47548 * 60.00144 * 1 2 3 24 24 H 1.08992 * 109.46863 * 240.00268 * 2 1 3 25 25 H 1.08997 * 109.47010 * 119.99886 * 2 1 3 26 26 H 1.09001 * 109.46960 * 60.00549 * 3 2 1 27 27 H 1.08997 * 109.47237 * 299.99748 * 3 2 1 28 28 H 0.96998 * 120.00065 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99698 * 184.99938 * 11 10 8 30 30 H 1.09000 * 110.01931 * 353.35222 * 16 7 5 31 31 H 1.08996 * 110.48503 * 335.78303 * 17 16 7 32 32 H 1.09001 * 110.48520 * 98.42877 * 17 16 7 33 33 H 1.09004 * 110.71664 * 279.57301 * 18 17 16 34 34 H 1.08998 * 110.92181 * 156.29646 * 18 17 16 35 35 H 1.08996 * 110.48775 * 203.40613 * 19 18 17 36 36 H 1.08999 * 110.59563 * 80.81719 * 19 18 17 37 37 H 1.08999 * 110.03298 * 238.56920 * 20 16 7 38 38 H 1.09001 * 110.03144 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1787 2.6097 0.0012 6 8 3.5741 3.6608 -0.0874 7 7 5.5229 2.6118 0.1001 8 6 6.2002 3.7992 0.2170 9 1 7.0945 3.9701 -0.3639 10 6 5.7361 4.7811 1.0824 11 7 4.7181 4.5304 1.8758 12 14 6.5581 6.4582 1.1192 13 1 5.8941 7.3565 0.1409 14 1 6.4409 7.0371 2.4817 15 1 7.9929 6.3140 0.7644 16 6 6.2601 1.3459 0.0889 17 6 7.2115 1.2777 1.3014 18 6 8.4737 0.5650 0.7532 19 6 8.6002 1.1446 -0.6776 20 6 7.1425 1.2610 -1.1689 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9899 0.6025 0.0013 29 1 4.3476 5.2371 2.4274 30 1 5.5634 0.5081 0.1135 31 1 7.4603 2.2807 1.6480 32 1 6.7628 0.6953 2.1061 33 1 8.3238 -0.5142 0.7209 34 1 9.3513 0.8140 1.3498 35 1 9.1648 0.4651 -1.3159 36 1 9.0740 2.1259 -0.6533 37 1 6.8745 0.3815 -1.7543 38 1 7.0218 2.1615 -1.7711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080213840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:18 Heat of formation + Delta-G solvation = -48.935651 kcal Electronic energy + Delta-G solvation = -18297.864688 eV Core-core repulsion = 15560.521421 eV Total energy + Delta-G solvation = -2737.343267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82673 -38.55772 -36.61272 -35.00725 -33.80108 -32.51693 -29.40368 -28.39037 -27.54504 -25.64158 -22.52865 -21.82771 -21.35244 -20.83509 -19.31191 -17.73717 -17.06834 -16.56043 -16.29363 -16.08745 -15.57954 -15.04373 -15.01706 -14.35980 -14.08190 -13.62648 -13.52530 -13.17812 -12.90630 -12.79501 -12.64439 -12.49420 -12.23663 -12.03458 -11.94670 -11.83247 -11.75709 -11.67740 -11.34873 -11.29812 -10.74659 -10.25881 -9.62803 -8.96981 -8.00852 -5.86702 1.39188 1.44557 1.51134 2.29540 2.64160 3.00240 3.37555 3.70303 3.92485 4.00071 4.02996 4.15186 4.23390 4.42241 4.59656 4.71691 4.75159 4.79801 4.84380 4.87407 4.96062 4.97785 5.13969 5.15055 5.20957 5.30279 5.31242 5.40466 5.47071 5.56097 5.62594 5.71624 6.03631 6.18093 6.65013 7.23378 7.58677 7.97156 8.67460 9.03690 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.009965 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.027342 B = 2809.061104 C = 4086.352728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.146 3.854 4 N -0.757 5.757 5 C 0.671 3.329 6 O -0.626 6.626 7 N -0.486 5.486 8 C -0.316 4.316 9 H 0.076 0.924 10 C 0.001 3.999 11 N -0.875 5.875 12 Si 0.967 3.033 13 H -0.292 1.292 14 H -0.287 1.287 15 H -0.252 1.252 16 C 0.129 3.871 17 C -0.126 4.126 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.128 4.128 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.395 0.605 29 H 0.250 0.750 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -13.349 -3.232 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.021 3.979 4 N -0.419 5.419 5 C 0.374 3.626 6 O -0.505 6.505 7 N -0.212 5.212 8 C -0.445 4.445 9 H 0.094 0.906 10 C -0.203 4.203 11 N -0.512 5.512 12 Si 0.793 3.207 13 H -0.219 1.219 14 H -0.212 1.212 15 H -0.175 1.175 16 C 0.024 3.976 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.167 4.167 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.232 0.768 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.470 -12.516 -3.096 12.977 hybrid contribution 0.094 1.153 0.313 1.198 sum 1.565 -11.364 -2.783 11.804 Atomic orbital electron populations 1.21670 0.93645 1.02982 1.01960 1.21655 0.97509 0.93299 1.03294 1.21024 0.79398 0.98320 0.99159 1.45208 1.06646 1.06839 1.83223 1.16391 0.83199 0.83349 0.79683 1.90661 1.68485 1.32708 1.58683 1.42778 1.02137 1.05311 1.70964 1.18879 1.10376 0.93821 1.21438 0.90597 1.26132 0.96954 1.03154 0.94104 1.70055 1.24347 1.32752 1.24023 0.85340 0.79283 0.79451 0.76647 1.21880 1.21246 1.17536 1.21885 0.93793 0.86190 0.95689 1.22585 0.96399 1.00531 0.96899 1.22416 0.96536 1.00022 0.95716 1.22247 0.95375 1.00621 0.96811 1.22480 0.96009 1.01232 0.96979 0.90122 0.93123 0.92561 0.90078 0.90894 0.95701 0.94425 0.76805 0.94112 0.90489 0.92967 0.92702 0.89566 0.91160 0.89546 0.93289 0.89970 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.12 -2.95 6.05 30.59 0.19 -2.77 16 3 C 0.15 5.47 5.68 86.38 0.49 5.96 16 4 N -0.76 -32.06 5.46 -478.54 -2.61 -34.67 16 5 C 0.67 36.78 7.36 179.06 1.32 38.10 16 6 O -0.63 -40.96 13.97 -3.98 -0.06 -41.01 16 7 N -0.49 -25.02 2.44 -626.05 -1.53 -26.55 16 8 C -0.32 -17.86 7.22 84.01 0.61 -17.26 16 9 H 0.08 4.15 7.52 -2.91 -0.02 4.13 16 10 C 0.00 0.04 4.77 84.90 0.41 0.44 16 11 N -0.88 -55.83 11.04 21.65 0.24 -55.59 16 12 Si 0.97 47.08 29.56 68.60 2.03 49.11 16 13 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 14 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 15 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 16 C 0.13 4.98 3.28 45.72 0.15 5.13 16 17 C -0.13 -4.59 6.40 31.70 0.20 -4.39 16 18 C -0.11 -2.90 6.91 31.91 0.22 -2.68 16 19 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 20 C -0.13 -4.20 6.28 31.32 0.20 -4.01 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.39 13.77 5.88 -92.71 -0.54 13.22 16 29 H 0.25 15.60 8.32 -92.71 -0.77 14.83 16 30 H 0.08 2.61 5.51 -2.39 -0.01 2.60 16 31 H 0.05 2.34 6.79 -2.39 -0.02 2.33 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.67 7.38 -2.39 -0.02 1.66 16 Total: -1.00 -76.95 301.74 3.26 -73.70 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.48 Total: 21.67 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.70 Total: 13.35 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.90 Total: -116.81 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.06 Total: -41.01 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -76.95 3.26 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.763 kcal (2) G-P(sol) polarization free energy of solvation -76.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds