Wall clock time and date at job start Mon Mar 30 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 N 1.46504 * 109.47229 * 120.00084 * 2 1 3 5 5 C 1.46501 * 119.99584 * 304.24045 * 4 2 1 6 6 C 1.50702 * 109.46551 * 269.99693 * 5 4 2 7 7 H 1.07991 * 120.00397 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99219 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99609 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47259 * 89.99852 * 10 8 6 12 12 H 1.48496 * 109.47059 * 210.00069 * 10 8 6 13 13 H 1.48500 * 109.47280 * 330.00235 * 10 8 6 14 14 C 1.34773 * 119.99966 * 124.23858 * 4 2 1 15 15 O 1.21280 * 119.99860 * 185.39873 * 14 4 2 16 16 C 1.50699 * 120.00205 * 5.39894 * 14 4 2 17 17 C 1.53008 * 109.46839 * 174.83097 * 16 14 4 18 18 C 1.53515 * 114.16681 * 184.99979 * 17 16 14 19 19 N 1.47478 * 87.93101 * 220.33236 * 18 17 16 20 20 C 1.47476 * 87.83972 * 27.01098 * 19 18 17 21 21 H 1.08996 * 109.47335 * 295.64741 * 1 2 3 22 22 H 1.08999 * 109.47175 * 55.65222 * 1 2 3 23 23 H 1.08999 * 109.46843 * 175.64574 * 1 2 3 24 24 H 1.09000 * 109.47273 * 239.99614 * 2 1 3 25 25 H 1.09002 * 109.47250 * 184.58109 * 3 2 1 26 26 H 1.09004 * 109.47224 * 304.58036 * 3 2 1 27 27 H 1.08996 * 109.47559 * 64.58414 * 3 2 1 28 28 H 1.08998 * 109.47686 * 29.99779 * 5 4 2 29 29 H 1.08996 * 109.46985 * 150.00523 * 5 4 2 30 30 H 0.97005 * 119.99760 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47118 * 54.83407 * 16 14 4 32 32 H 1.08993 * 109.47204 * 294.82966 * 16 14 4 33 33 H 1.08993 * 113.38226 * 318.07757 * 17 16 14 34 34 H 1.08999 * 113.47839 * 105.56560 * 18 17 16 35 35 H 1.09007 * 113.53156 * 335.10421 * 18 17 16 36 36 H 1.00896 * 111.00004 * 138.70570 * 19 18 17 37 37 H 1.08997 * 113.47833 * 87.75598 * 20 19 18 38 38 H 1.09003 * 113.47780 * 218.22740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5895 -0.2466 2.5247 6 6 2.5499 0.7938 3.0408 7 1 3.3949 1.0944 2.4393 8 6 2.3496 1.3618 4.2812 9 7 1.3209 0.9953 5.0139 10 14 3.5397 2.6519 4.9207 11 1 3.0788 4.0006 4.5038 12 1 3.5940 2.5836 6.4031 13 1 4.8924 2.3970 4.3636 14 6 2.8622 -1.7345 1.0743 15 8 3.1893 -2.3675 2.0557 16 6 3.3991 -2.1151 -0.2813 17 6 4.4250 -3.2396 -0.1261 18 6 5.1320 -3.6300 -1.4317 19 7 5.0205 -5.0383 -1.0083 20 6 3.8305 -4.6513 -0.2279 21 1 -0.3634 0.4448 0.9264 22 1 -0.3633 0.5798 -0.8485 23 1 -0.3633 -1.0247 -0.0780 24 1 1.8934 -0.5139 -0.8899 25 1 3.1269 1.4436 -0.0821 26 1 1.6112 1.9795 -0.8461 27 1 1.7453 1.9321 0.9281 28 1 0.5897 0.1826 2.4593 29 1 1.5757 -1.0977 3.2054 30 1 1.1799 1.3953 5.8864 31 1 3.8762 -1.2487 -0.7395 32 1 2.5797 -2.4557 -0.9142 33 1 5.0970 -3.0983 0.7203 34 1 6.1607 -3.2747 -1.4915 35 1 4.5534 -3.3984 -2.3260 36 1 4.7668 -5.6303 -1.7849 37 1 2.9038 -4.6919 -0.8003 38 1 3.7562 -5.1614 0.7325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081746686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:55 Heat of formation + Delta-G solvation = -10.296144 kcal Electronic energy + Delta-G solvation = -17955.865569 eV Core-core repulsion = 15220.197836 eV Total energy + Delta-G solvation = -2735.667732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96591 -38.62318 -35.89702 -32.86497 -31.12886 -30.76443 -27.46916 -26.75820 -25.77327 -24.99190 -22.59894 -21.21058 -19.50741 -18.07487 -16.66555 -16.44540 -16.16327 -15.59914 -14.91841 -14.56987 -14.05378 -13.75768 -13.45558 -13.05650 -12.80913 -12.41368 -12.35143 -11.79317 -11.70169 -11.54728 -11.50579 -11.09662 -10.95119 -10.86122 -10.77577 -10.52708 -10.34314 -10.28851 -9.97832 -9.52043 -9.08512 -8.78888 -8.40362 -7.60031 -6.01999 -4.05395 3.30307 3.37545 3.40427 3.48916 3.92343 4.21467 4.45414 4.54480 4.82194 5.17024 5.24329 5.25011 5.32164 5.42004 5.53785 5.57963 5.63893 5.67710 5.72029 5.88759 5.91477 6.03052 6.10113 6.17249 6.27852 6.35120 6.46145 6.60057 6.97221 7.15703 7.19909 7.51556 7.61560 7.95496 8.27892 8.49950 8.94127 9.15570 9.58886 11.06040 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.006727 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.620224 B = 4161.219751 C = 4634.752352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.162 4.162 4 N -0.595 5.595 5 C 0.243 3.757 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.541 6.541 16 C -0.133 4.133 17 C -0.093 4.093 18 C 0.001 3.999 19 N -0.630 5.630 20 C 0.007 3.993 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.315 0.685 37 H 0.062 0.938 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -4.212 -15.061 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 C -0.220 4.220 4 N -0.327 5.327 5 C 0.124 3.876 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.112 4.112 18 C -0.129 4.129 19 N -0.254 5.254 20 C -0.123 4.123 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.620 -4.701 -13.788 14.657 hybrid contribution -0.211 1.048 -0.320 1.116 sum 1.409 -3.653 -14.108 14.642 Atomic orbital electron populations 1.22158 0.95569 1.01540 1.02784 1.20959 0.94141 0.93959 0.87963 1.22204 1.00777 0.95981 1.03026 1.48322 1.45573 1.30264 1.08586 1.19248 0.95269 0.95636 0.77409 1.21455 1.10841 1.21588 1.01990 0.92385 1.24932 0.95559 0.97162 0.96517 1.69933 1.28657 1.43076 1.11768 0.86555 0.81530 0.81563 0.78133 1.20699 1.21162 1.19942 1.20269 0.79535 0.80626 0.90297 1.90661 1.58766 1.52447 1.40003 1.21706 0.99009 0.99644 0.97001 1.22511 0.97381 0.93060 0.98282 1.23696 1.01600 0.90578 0.97069 1.67319 1.31083 1.06857 1.20096 1.23646 0.92477 0.96324 0.99848 0.91030 0.92310 0.93047 0.90904 0.93067 0.93274 0.89669 0.94792 0.93991 0.92806 0.89181 0.89793 0.87014 0.89890 0.91848 0.87361 0.92017 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.19 37.16 0.34 -2.03 16 2 C 0.13 2.14 3.12 -67.93 -0.21 1.93 16 3 C -0.16 -2.60 8.74 37.16 0.32 -2.28 16 4 N -0.60 -12.31 2.39 -167.47 -0.40 -12.71 16 5 C 0.24 6.26 4.73 -5.19 -0.02 6.23 16 6 C -0.52 -14.38 7.72 -34.44 -0.27 -14.64 16 7 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.51 10.32 7.65 -10.99 -0.08 10.24 16 15 O -0.54 -13.46 15.35 5.56 0.09 -13.37 16 16 C -0.13 -1.91 3.94 -27.88 -0.11 -2.02 16 17 C -0.09 -1.33 3.47 -90.08 -0.31 -1.64 16 18 C 0.00 0.01 8.20 -7.54 -0.06 -0.05 16 19 N -0.63 -7.62 8.71 -122.64 -1.07 -8.69 16 20 C 0.01 0.09 8.19 -7.54 -0.06 0.03 16 21 H 0.07 1.22 6.34 -51.93 -0.33 0.89 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.95 5.85 -51.93 -0.30 0.64 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.66 6.60 -51.93 -0.34 1.31 16 28 H 0.03 0.88 6.13 -51.93 -0.32 0.56 16 29 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 31 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 32 H 0.08 1.00 7.39 -51.93 -0.38 0.62 16 33 H 0.11 1.91 7.72 -51.93 -0.40 1.51 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.58 8.11 -51.92 -0.42 0.16 16 36 H 0.31 3.04 8.91 -39.29 -0.35 2.69 16 37 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -32.04 305.87 -7.74 -39.78 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.12 Total: 1.99 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.56 Total: -2.62 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.73 Total: -47.13 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.04 -7.74 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081746686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.483 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds