Wall clock time and date at job start Mon Mar 30 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 N 1.46504 * 109.47229 * 120.00084 * 2 1 3 5 5 C 1.46501 * 119.99584 * 304.24045 * 4 2 1 6 6 C 1.50702 * 109.46551 * 269.99693 * 5 4 2 7 7 H 1.07991 * 120.00397 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99219 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99609 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47259 * 89.99852 * 10 8 6 12 12 H 1.48496 * 109.47059 * 210.00069 * 10 8 6 13 13 H 1.48500 * 109.47280 * 330.00235 * 10 8 6 14 14 C 1.34773 * 119.99966 * 124.23858 * 4 2 1 15 15 O 1.21280 * 119.99860 * 185.39873 * 14 4 2 16 16 C 1.50699 * 120.00205 * 5.39894 * 14 4 2 17 17 C 1.53008 * 109.46839 * 174.83097 * 16 14 4 18 18 C 1.53515 * 114.16681 * 184.99979 * 17 16 14 19 19 N 1.47478 * 87.93101 * 220.33236 * 18 17 16 20 20 C 1.47476 * 87.83972 * 27.01098 * 19 18 17 21 21 H 1.08996 * 109.47335 * 295.64741 * 1 2 3 22 22 H 1.08999 * 109.47175 * 55.65222 * 1 2 3 23 23 H 1.08999 * 109.46843 * 175.64574 * 1 2 3 24 24 H 1.09000 * 109.47273 * 239.99614 * 2 1 3 25 25 H 1.09002 * 109.47250 * 184.58109 * 3 2 1 26 26 H 1.09004 * 109.47224 * 304.58036 * 3 2 1 27 27 H 1.08996 * 109.47559 * 64.58414 * 3 2 1 28 28 H 1.08998 * 109.47686 * 29.99779 * 5 4 2 29 29 H 1.08996 * 109.46985 * 150.00523 * 5 4 2 30 30 H 0.97005 * 119.99760 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47118 * 54.83407 * 16 14 4 32 32 H 1.08993 * 109.47204 * 294.82966 * 16 14 4 33 33 H 1.08993 * 113.38226 * 318.07757 * 17 16 14 34 34 H 1.08999 * 113.47839 * 105.56560 * 18 17 16 35 35 H 1.09007 * 113.53156 * 335.10421 * 18 17 16 36 36 H 1.00896 * 111.00004 * 138.70570 * 19 18 17 37 37 H 1.08997 * 113.47833 * 87.75598 * 20 19 18 38 38 H 1.09003 * 113.47780 * 218.22740 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5895 -0.2466 2.5247 6 6 2.5499 0.7938 3.0408 7 1 3.3949 1.0944 2.4393 8 6 2.3496 1.3618 4.2812 9 7 1.3209 0.9953 5.0139 10 14 3.5397 2.6519 4.9207 11 1 3.0788 4.0006 4.5038 12 1 3.5940 2.5836 6.4031 13 1 4.8924 2.3970 4.3636 14 6 2.8622 -1.7345 1.0743 15 8 3.1893 -2.3675 2.0557 16 6 3.3991 -2.1151 -0.2813 17 6 4.4250 -3.2396 -0.1261 18 6 5.1320 -3.6300 -1.4317 19 7 5.0205 -5.0383 -1.0083 20 6 3.8305 -4.6513 -0.2279 21 1 -0.3634 0.4448 0.9264 22 1 -0.3633 0.5798 -0.8485 23 1 -0.3633 -1.0247 -0.0780 24 1 1.8934 -0.5139 -0.8899 25 1 3.1269 1.4436 -0.0821 26 1 1.6112 1.9795 -0.8461 27 1 1.7453 1.9321 0.9281 28 1 0.5897 0.1826 2.4593 29 1 1.5757 -1.0977 3.2054 30 1 1.1799 1.3953 5.8864 31 1 3.8762 -1.2487 -0.7395 32 1 2.5797 -2.4557 -0.9142 33 1 5.0970 -3.0983 0.7203 34 1 6.1607 -3.2747 -1.4915 35 1 4.5534 -3.3984 -2.3260 36 1 4.7668 -5.6303 -1.7849 37 1 2.9038 -4.6919 -0.8003 38 1 3.7562 -5.1614 0.7325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081746686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:54 Heat of formation + Delta-G solvation = -34.442904 kcal Electronic energy + Delta-G solvation = -17956.912651 eV Core-core repulsion = 15220.197836 eV Total energy + Delta-G solvation = -2736.714815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22690 -39.96319 -37.48412 -34.94818 -32.40729 -32.35135 -29.33389 -27.99522 -26.71021 -26.38604 -24.45775 -22.61369 -20.55620 -19.57429 -18.59276 -18.09820 -17.32708 -16.85645 -16.61769 -16.14294 -15.61034 -15.02028 -14.80292 -14.47171 -14.23292 -13.91727 -13.43519 -13.33423 -13.28173 -13.04104 -12.85881 -12.73483 -12.59308 -12.35345 -12.18817 -12.09685 -11.87705 -11.62685 -11.45367 -11.31957 -10.60125 -10.49528 -9.91865 -9.36264 -8.19052 -6.31155 1.35233 1.38311 1.47995 1.90608 2.33501 2.47826 3.10363 3.26713 3.47108 3.77938 3.91886 4.02812 4.31179 4.34445 4.43401 4.48433 4.54170 4.58707 4.75080 4.88161 4.88982 4.90743 4.93758 5.04622 5.09021 5.14532 5.15306 5.27998 5.33550 5.46582 5.62554 5.66645 5.93559 6.13078 6.41513 6.76158 6.90506 7.33121 7.57335 8.88129 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.006727 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.620224 B = 4161.219751 C = 4634.752352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 C -0.158 4.158 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.492 3.508 15 O -0.601 6.601 16 C -0.115 4.115 17 C -0.107 4.107 18 C 0.020 3.980 19 N -0.646 5.646 20 C 0.008 3.992 21 H 0.035 0.965 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.120 0.880 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.026 0.974 29 H -0.011 1.011 30 H 0.265 0.735 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.332 0.668 37 H 0.088 0.912 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -3.456 -18.634 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 C -0.216 4.216 4 N -0.331 5.331 5 C 0.139 3.861 6 C -0.564 4.564 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.282 3.718 15 O -0.482 6.482 16 C -0.155 4.155 17 C -0.127 4.127 18 C -0.110 4.110 19 N -0.271 5.271 20 C -0.122 4.122 21 H 0.054 0.946 22 H 0.115 0.885 23 H 0.076 0.924 24 H 0.137 0.863 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.072 -3.931 -17.421 17.979 hybrid contribution -0.383 0.768 0.775 1.157 sum 1.689 -3.163 -16.646 17.028 Atomic orbital electron populations 1.22131 0.94588 1.02350 1.02528 1.21409 0.95025 0.93963 0.87237 1.22147 1.00843 0.96074 1.02497 1.48383 1.45716 1.30832 1.08204 1.18648 0.94801 0.93001 0.79644 1.21688 1.10815 1.21718 1.02225 0.92685 1.25824 0.97275 0.99412 0.96853 1.70060 1.30448 1.44486 1.12196 0.85505 0.79076 0.79473 0.77319 1.18829 1.21005 1.19810 1.21487 0.78487 0.79530 0.92311 1.90634 1.60557 1.54324 1.42712 1.21700 1.00024 1.00640 0.93100 1.22426 0.97508 0.93695 0.99046 1.23665 1.01942 0.89237 0.96191 1.67252 1.30647 1.08069 1.21142 1.23629 0.94032 0.95321 0.99228 0.94596 0.88512 0.92386 0.86261 0.93317 0.89275 0.93884 0.95657 0.99278 0.92659 0.86618 0.85894 0.91232 0.89605 0.88213 0.85474 0.89386 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.19 71.98 0.66 -3.61 16 2 C 0.13 3.69 3.12 44.99 0.14 3.83 16 3 C -0.16 -4.70 8.74 71.98 0.63 -4.07 16 4 N -0.60 -24.93 2.39 -802.15 -1.92 -26.85 16 5 C 0.26 14.09 4.73 85.63 0.41 14.50 16 6 C -0.53 -30.11 7.72 25.60 0.20 -29.92 16 7 H 0.05 3.11 7.59 -2.92 -0.02 3.09 16 8 C 0.00 0.27 5.46 84.66 0.46 0.73 16 9 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 10 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 14 C 0.49 20.16 7.65 87.66 0.67 20.83 16 15 O -0.60 -31.51 15.35 -3.03 -0.05 -31.56 16 16 C -0.11 -2.95 3.94 29.85 0.12 -2.83 16 17 C -0.11 -2.90 3.47 -10.44 -0.04 -2.94 16 18 C 0.02 0.37 8.20 83.58 0.69 1.05 16 19 N -0.65 -14.17 8.71 -541.94 -4.72 -18.89 16 20 C 0.01 0.20 8.19 83.58 0.68 0.89 16 21 H 0.03 1.22 6.34 -2.39 -0.02 1.20 16 22 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.12 2.44 5.85 -2.39 -0.01 2.42 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.65 6.60 -2.39 -0.02 1.64 16 28 H 0.03 1.40 6.13 -2.39 -0.01 1.39 16 29 H -0.01 -0.70 7.35 -2.39 -0.02 -0.71 16 30 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 31 H 0.12 2.43 7.85 -2.39 -0.02 2.41 16 32 H 0.12 2.26 7.39 -2.39 -0.02 2.24 16 33 H 0.07 2.48 7.72 -2.39 -0.02 2.46 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.20 8.11 -2.38 -0.02 1.18 16 36 H 0.33 5.35 8.91 -89.70 -0.80 4.55 16 37 H 0.09 1.72 7.87 -2.39 -0.02 1.70 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.26 305.87 0.49 -75.78 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.24 Total: 12.47 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.62 Total: -1.54 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -6.35 Total: -102.62 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.26 0.49 -75.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081746686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.334 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds