Wall clock time and date at job start Mon Mar 30 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 H 1.09003 * 109.47561 * 304.99710 * 3 2 1 5 5 C 1.50704 * 109.47164 * 185.00363 * 3 2 1 6 6 H 1.08003 * 119.99598 * 240.27497 * 5 3 2 7 7 C 1.37875 * 120.00273 * 59.99848 * 5 3 2 8 8 N 1.31512 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00202 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47121 * 119.99742 * 9 7 5 12 12 H 1.48503 * 109.46960 * 240.00059 * 9 7 5 13 13 N 1.46497 * 109.47125 * 65.00255 * 3 2 1 14 14 C 1.34781 * 119.99938 * 275.00040 * 13 3 2 15 15 O 1.21277 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99964 * 180.02562 * 14 13 3 17 17 H 1.09001 * 110.43566 * 83.03193 * 16 14 13 18 18 C 1.54887 * 110.48793 * 320.48725 * 16 14 13 19 19 C 1.54889 * 102.74962 * 203.38277 * 18 16 14 20 20 C 1.54263 * 104.19591 * 37.93936 * 19 18 16 21 21 C 1.53873 * 106.60211 * 336.39111 * 20 19 18 22 22 H 1.08993 * 110.03574 * 240.71944 * 21 20 19 23 23 N 1.46901 * 110.03647 * 119.28278 * 21 20 19 24 24 H 1.09005 * 109.47126 * 60.00339 * 1 2 3 25 25 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47069 * 299.99889 * 1 2 3 27 27 H 1.09002 * 109.47125 * 240.00181 * 2 1 3 28 28 H 1.09001 * 109.47437 * 120.00058 * 2 1 3 29 29 H 0.97000 * 120.00165 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00421 * 94.99818 * 13 3 2 31 31 H 1.09006 * 110.75435 * 321.69560 * 18 16 14 32 32 H 1.08991 * 110.75667 * 84.87736 * 18 16 14 33 33 H 1.09004 * 110.48263 * 156.61661 * 19 18 16 34 34 H 1.08999 * 110.48242 * 279.26067 * 19 18 16 35 35 H 1.09002 * 110.03003 * 95.67672 * 20 19 18 36 36 H 1.08998 * 110.03295 * 217.10494 * 20 19 18 37 37 H 1.00904 * 110.99872 * 308.82408 * 23 21 20 38 38 H 1.00905 * 110.99792 * 72.77140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1473 1.8850 0.6544 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3813 10 1 6.5987 1.5455 -0.1938 11 1 6.4962 -0.5188 -1.4628 12 1 6.3998 1.6159 -2.6093 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3394 2.6326 0.4342 16 6 0.0366 3.3385 2.6545 17 1 0.4222 4.3576 2.6857 18 6 0.5475 2.5281 3.8716 19 6 -0.4131 2.9693 5.0036 20 6 -1.7837 3.0990 4.3077 21 6 -1.4978 3.3338 2.8141 22 1 -1.9086 4.2938 2.5017 23 7 -2.0836 2.2506 2.0132 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0602 -2.9504 30 1 2.2719 2.1231 1.9978 31 1 0.4607 1.4574 3.6866 32 1 1.5772 2.7953 4.1088 33 1 -0.4530 2.2120 5.7867 34 1 -0.1019 3.9293 5.4154 35 1 -2.3571 2.1813 4.4383 36 1 -2.3333 3.9451 4.7201 37 1 -1.8064 1.3477 2.3683 38 1 -3.0888 2.3313 1.9759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:24 Heat of formation + Delta-G solvation = -45.988422 kcal Electronic energy + Delta-G solvation = -18354.157546 eV Core-core repulsion = 15616.942080 eV Total energy + Delta-G solvation = -2737.215466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.59999 -37.21322 -34.71317 -32.57787 -31.86671 -30.79510 -28.91297 -26.61235 -26.47685 -22.99835 -21.42159 -20.52829 -19.43713 -18.69751 -17.02366 -16.70012 -15.61781 -15.06702 -14.53145 -14.19087 -14.14031 -13.75317 -13.50111 -12.91045 -12.59146 -12.37679 -11.81678 -11.47874 -11.37478 -11.18154 -11.08858 -10.94375 -10.83489 -10.77150 -10.62229 -10.55321 -10.19788 -9.98353 -9.46177 -8.90069 -8.62579 -8.40156 -7.98143 -7.50191 -6.03546 -4.12089 3.27827 3.35632 3.38295 3.81499 4.26363 4.45194 4.55698 4.71624 4.79276 5.06897 5.27349 5.42549 5.46647 5.53809 5.64550 5.66592 5.78283 5.88542 6.03236 6.15421 6.27983 6.34550 6.54075 6.65474 6.84922 7.21524 7.37391 7.49232 7.56961 7.70653 7.75582 7.75801 7.92386 8.06621 8.32368 8.88682 8.99417 9.45692 9.61854 11.01646 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.006556 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.876556 B = 4269.623198 C = 4678.556108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.046 0.954 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.720 5.720 14 C 0.507 3.493 15 O -0.507 6.507 16 C -0.113 4.113 17 H 0.095 0.905 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.161 4.161 21 C 0.110 3.890 22 H 0.080 0.920 23 N -0.811 5.811 24 H 0.048 0.952 25 H 0.015 0.985 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.382 0.618 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.334 0.666 38 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 3.685 13.101 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.370 5.370 14 C 0.290 3.710 15 O -0.381 6.381 16 C -0.135 4.135 17 H 0.113 0.887 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.201 4.201 21 C -0.003 4.003 22 H 0.098 0.902 23 N -0.339 5.339 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.289 3.862 11.574 14.213 hybrid contribution 0.892 -0.312 1.237 1.556 sum -6.397 3.550 12.811 14.753 Atomic orbital electron populations 1.21861 0.98013 0.97525 1.02040 1.21911 0.92904 0.99966 1.01729 1.18650 0.93694 0.89060 0.81506 0.93643 1.21324 0.91127 1.38528 1.05890 0.92290 1.24886 0.98350 0.95002 0.95537 1.69917 1.34845 1.37954 1.09344 0.86455 0.85284 0.77674 0.78032 1.19835 1.20973 1.20965 1.46510 1.14934 1.57438 1.18086 1.19891 0.82400 0.79959 0.88701 1.90695 1.50164 1.57815 1.39449 1.22298 0.96101 1.00548 0.94526 0.88732 1.22562 0.99134 1.00373 0.93873 1.22295 0.94895 1.01148 0.97553 1.23144 0.97708 1.01392 0.97834 1.21755 0.93519 0.96006 0.89041 0.90222 1.58783 1.13420 1.04405 1.57273 0.93331 0.96621 0.92966 0.88773 0.95512 0.92780 0.78642 0.90898 0.90931 0.91876 0.91592 0.92003 0.91874 0.85262 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.06 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -25.25 11.29 55.43 0.63 -24.63 16 9 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.72 -15.02 4.86 -54.93 -0.27 -15.28 16 14 C 0.51 9.93 5.37 -10.98 -0.06 9.87 16 15 O -0.51 -11.71 11.82 5.56 0.07 -11.64 16 16 C -0.11 -1.62 3.33 -90.11 -0.30 -1.92 16 17 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 18 C -0.12 -1.46 5.40 -24.74 -0.13 -1.59 16 19 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 20 C -0.16 -1.62 6.52 -25.62 -0.17 -1.78 16 21 C 0.11 1.42 3.76 -66.59 -0.25 1.17 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 N -0.81 -11.60 6.33 -3.72 -0.02 -11.63 16 24 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 1.11 4.86 -51.93 -0.25 0.86 16 27 H 0.09 2.60 5.95 -51.93 -0.31 2.29 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.38 7.12 7.67 -40.82 -0.31 6.80 16 31 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.33 4.76 8.24 -39.29 -0.32 4.44 16 38 H 0.33 4.03 9.08 -39.29 -0.36 3.67 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -30.22 294.80 -7.74 -37.96 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.10 Total: 12.59 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.46 Total: -7.74 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.34 Total: -51.54 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.22 -7.74 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.030 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds