Wall clock time and date at job start Mon Mar 30 2020 03:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 H 1.09003 * 109.47561 * 304.99710 * 3 2 1 5 5 C 1.50704 * 109.47164 * 185.00363 * 3 2 1 6 6 H 1.08003 * 119.99598 * 240.27497 * 5 3 2 7 7 C 1.37875 * 120.00273 * 59.99848 * 5 3 2 8 8 N 1.31512 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00202 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47121 * 119.99742 * 9 7 5 12 12 H 1.48503 * 109.46960 * 240.00059 * 9 7 5 13 13 N 1.46497 * 109.47125 * 65.00255 * 3 2 1 14 14 C 1.34781 * 119.99938 * 275.00040 * 13 3 2 15 15 O 1.21277 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99964 * 180.02562 * 14 13 3 17 17 H 1.09001 * 110.43566 * 83.03193 * 16 14 13 18 18 C 1.54887 * 110.48793 * 320.48725 * 16 14 13 19 19 C 1.54889 * 102.74962 * 203.38277 * 18 16 14 20 20 C 1.54263 * 104.19591 * 37.93936 * 19 18 16 21 21 C 1.53873 * 106.60211 * 336.39111 * 20 19 18 22 22 H 1.08993 * 110.03574 * 240.71944 * 21 20 19 23 23 N 1.46901 * 110.03647 * 119.28278 * 21 20 19 24 24 H 1.09005 * 109.47126 * 60.00339 * 1 2 3 25 25 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47069 * 299.99889 * 1 2 3 27 27 H 1.09002 * 109.47125 * 240.00181 * 2 1 3 28 28 H 1.09001 * 109.47437 * 120.00058 * 2 1 3 29 29 H 0.97000 * 120.00165 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00421 * 94.99818 * 13 3 2 31 31 H 1.09006 * 110.75435 * 321.69560 * 18 16 14 32 32 H 1.08991 * 110.75667 * 84.87736 * 18 16 14 33 33 H 1.09004 * 110.48263 * 156.61661 * 19 18 16 34 34 H 1.08999 * 110.48242 * 279.26067 * 19 18 16 35 35 H 1.09002 * 110.03003 * 95.67672 * 20 19 18 36 36 H 1.08998 * 110.03295 * 217.10494 * 20 19 18 37 37 H 1.00904 * 110.99872 * 308.82408 * 23 21 20 38 38 H 1.00905 * 110.99792 * 72.77140 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1473 1.8850 0.6544 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3813 10 1 6.5987 1.5455 -0.1938 11 1 6.4962 -0.5188 -1.4628 12 1 6.3998 1.6159 -2.6093 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3394 2.6326 0.4342 16 6 0.0366 3.3385 2.6545 17 1 0.4222 4.3576 2.6857 18 6 0.5475 2.5281 3.8716 19 6 -0.4131 2.9693 5.0036 20 6 -1.7837 3.0990 4.3077 21 6 -1.4978 3.3338 2.8141 22 1 -1.9086 4.2938 2.5017 23 7 -2.0836 2.2506 2.0132 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0602 -2.9504 30 1 2.2719 2.1231 1.9978 31 1 0.4607 1.4574 3.6866 32 1 1.5772 2.7953 4.1088 33 1 -0.4530 2.2120 5.7867 34 1 -0.1019 3.9293 5.4154 35 1 -2.3571 2.1813 4.4383 36 1 -2.3333 3.9451 4.7201 37 1 -1.8064 1.3477 2.3683 38 1 -3.0888 2.3313 1.9759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:24 Heat of formation + Delta-G solvation = -67.346717 kcal Electronic energy + Delta-G solvation = -18355.083711 eV Core-core repulsion = 15616.942080 eV Total energy + Delta-G solvation = -2738.141631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97341 -38.56087 -36.57898 -34.25546 -33.32351 -32.47507 -30.17552 -28.51432 -27.46210 -24.96661 -22.84447 -21.67578 -21.01120 -20.24316 -18.64958 -17.92490 -17.24788 -16.91350 -16.05331 -15.74340 -15.34433 -15.08889 -14.54765 -14.51812 -14.21771 -13.90806 -13.32481 -13.17220 -13.06907 -12.84108 -12.67235 -12.52149 -12.09974 -12.01032 -11.94006 -11.86995 -11.65720 -11.49038 -11.43376 -10.95095 -10.51730 -10.12164 -9.38234 -9.06982 -8.12227 -6.29250 1.43983 1.44926 1.56841 2.26520 2.40540 2.89186 3.16676 3.58936 3.67702 3.82186 4.14068 4.44248 4.50726 4.57300 4.60071 4.63376 4.68152 4.71913 4.82574 4.91481 5.03981 5.16162 5.19069 5.24743 5.32448 5.38184 5.46958 5.57406 5.65101 5.79618 5.91158 6.07620 6.27302 6.48444 6.75410 6.82388 7.29948 7.39465 7.95272 8.93043 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.006556 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.876556 B = 4269.623198 C = 4678.556108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.009 1.009 5 C -0.545 4.545 6 H 0.068 0.932 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.717 5.717 14 C 0.503 3.497 15 O -0.546 6.546 16 C -0.108 4.108 17 H 0.108 0.892 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.150 4.150 21 C 0.108 3.892 22 H 0.077 0.923 23 N -0.833 5.833 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.263 0.737 30 H 0.395 0.605 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.332 0.668 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 4.145 15.661 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.009 0.991 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.368 5.368 14 C 0.289 3.711 15 O -0.423 6.423 16 C -0.130 4.130 17 H 0.126 0.874 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.190 4.190 21 C -0.005 4.005 22 H 0.096 0.904 23 N -0.362 5.362 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.819 4.341 14.181 16.323 hybrid contribution 0.695 -0.426 0.395 0.906 sum -6.124 3.915 14.576 16.288 Atomic orbital electron populations 1.21693 0.96461 0.98527 1.01231 1.21749 0.94187 0.99286 1.00551 1.18202 0.93053 0.89015 0.81903 0.99095 1.21669 0.91903 1.38484 1.06294 0.91388 1.25780 1.03205 0.94538 0.95149 1.70076 1.36892 1.38687 1.09896 0.85355 0.79364 0.77787 0.78158 1.18469 1.20463 1.21066 1.46318 1.16011 1.57594 1.16909 1.20808 0.81174 0.79007 0.90099 1.90681 1.51069 1.59078 1.41424 1.22328 0.97617 1.00815 0.92269 0.87411 1.22553 1.00441 0.99146 0.93471 1.22278 0.93656 1.02318 0.96823 1.23018 0.98264 1.02362 0.95319 1.21812 0.92125 0.95491 0.91051 0.90445 1.58740 1.14416 1.04709 1.58364 0.96243 0.94582 0.91599 0.91792 0.94594 0.92776 0.77106 0.92190 0.89810 0.90524 0.90067 0.91566 0.90149 0.85473 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.84 2.24 44.25 0.10 14.94 16 4 H -0.01 -0.56 7.58 -2.39 -0.02 -0.58 16 5 C -0.55 -29.60 8.73 25.60 0.22 -29.38 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -53.90 11.29 21.45 0.24 -53.66 16 9 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.72 -30.00 4.86 -446.10 -2.17 -32.16 16 14 C 0.50 19.68 5.37 87.66 0.47 20.15 16 15 O -0.55 -25.82 11.82 -3.02 -0.04 -25.86 16 16 C -0.11 -2.94 3.33 -10.46 -0.03 -2.98 16 17 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 18 C -0.12 -2.52 5.40 31.88 0.17 -2.35 16 19 C -0.11 -1.78 6.83 31.67 0.22 -1.56 16 20 C -0.15 -2.52 6.52 31.32 0.20 -2.32 16 21 C 0.11 2.59 3.76 45.64 0.17 2.76 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 N -0.83 -23.24 6.33 -165.68 -1.05 -24.28 16 24 H 0.02 0.96 7.85 -2.38 -0.02 0.95 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.83 4.86 -2.39 -0.01 2.81 16 27 H 0.06 3.65 5.95 -2.39 -0.01 3.64 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.40 14.36 7.67 -92.71 -0.71 13.65 16 31 H 0.06 1.45 8.05 -2.38 -0.02 1.43 16 32 H 0.08 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.08 7.84 -2.39 -0.02 1.07 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.33 9.20 8.24 -89.69 -0.74 8.46 16 38 H 0.34 8.05 9.08 -89.69 -0.81 7.23 16 Total: -1.00 -67.09 294.80 0.57 -66.52 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -1.19 Total: 34.88 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 2.75 Total: -10.43 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -2.97 Total: -110.11 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -67.09 0.57 -66.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.827 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds