Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1 5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1 6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2 7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2 8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47013 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47356 * 119.99413 * 9 7 5 12 12 H 1.48498 * 109.47361 * 239.99879 * 9 7 5 13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 H 1.09007 * 110.43138 * 300.69962 * 16 14 13 18 18 C 1.54891 * 110.48798 * 63.23828 * 16 14 13 19 19 C 1.55032 * 102.68276 * 156.51885 * 18 16 14 20 20 C 1.54269 * 104.27775 * 322.23470 * 19 18 16 21 21 C 1.53872 * 106.60057 * 23.52240 * 20 19 18 22 22 H 1.09009 * 110.02865 * 240.71540 * 21 20 19 23 23 N 1.46901 * 110.07566 * 119.30525 * 21 20 19 24 24 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46445 * 299.99766 * 1 2 3 26 26 H 1.09000 * 109.47153 * 59.99728 * 1 2 3 27 27 H 1.09001 * 109.47180 * 240.00326 * 2 1 3 28 28 H 1.09000 * 109.47366 * 119.99762 * 2 1 3 29 29 H 0.97001 * 119.99446 * 179.97438 * 8 7 5 30 30 H 0.96995 * 120.00292 * 265.27526 * 13 3 2 31 31 H 1.08997 * 110.75538 * 274.93811 * 18 16 14 32 32 H 1.09001 * 110.75179 * 38.30792 * 18 16 14 33 33 H 1.08998 * 110.52114 * 203.48988 * 19 18 16 34 34 H 1.08999 * 110.47596 * 80.95993 * 19 18 16 35 35 H 1.08999 * 110.02896 * 264.23199 * 20 19 18 36 36 H 1.09001 * 110.02847 * 142.80306 * 20 19 18 37 37 H 1.00899 * 110.99486 * 62.80757 * 23 21 20 38 38 H 1.00899 * 111.00017 * 186.76262 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5989 1.5442 0.1930 11 1 6.4001 1.6156 2.6090 12 1 6.4963 -0.5190 1.4626 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 1 0.7255 4.1489 -2.8894 18 6 -0.0065 2.3103 -3.8130 19 6 -0.9733 2.9778 -4.8246 20 6 -2.0514 3.6389 -3.9411 21 6 -1.4095 3.8678 -2.5615 22 1 -1.9601 3.3185 -1.7978 23 7 -1.4003 5.3015 -2.2414 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8294 -0.0612 2.9498 30 1 2.2704 2.1197 -1.9991 31 1 0.9834 2.1796 -4.2500 32 1 -0.4071 1.3568 -3.4689 33 1 -1.4214 2.2281 -5.4766 34 1 -0.4488 3.7301 -5.4138 35 1 -2.9134 2.9785 -3.8470 36 1 -2.3560 4.5918 -4.3740 37 1 -2.3398 5.6636 -2.1769 38 1 -0.8852 5.4790 -1.3921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -62.464514 kcal Electronic energy + Delta-G solvation = -18095.343771 eV Core-core repulsion = 15357.413848 eV Total energy + Delta-G solvation = -2737.929923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67054 -37.30621 -34.94642 -32.72478 -32.18245 -31.01485 -28.99851 -26.77684 -26.32283 -23.11421 -21.62438 -20.41787 -19.43784 -19.03281 -17.35516 -16.19516 -15.50549 -15.24237 -15.13413 -14.55151 -14.33390 -13.82856 -13.74329 -12.94556 -12.69942 -12.25506 -11.78614 -11.53408 -11.46113 -11.25556 -11.07978 -11.04610 -10.93348 -10.80844 -10.72812 -10.55901 -10.29612 -10.14592 -9.62387 -9.03757 -8.91651 -8.53456 -8.46174 -7.78963 -6.12332 -4.21496 3.23362 3.31392 3.34035 3.44675 4.10254 4.37604 4.58984 4.65426 4.85299 5.08027 5.19134 5.46634 5.52912 5.63115 5.68082 5.78317 5.92406 5.97017 6.03853 6.13953 6.29724 6.36993 6.38874 6.46626 6.66361 7.04246 7.20026 7.28888 7.37749 7.48568 7.54292 7.63084 7.74926 7.91486 8.18999 8.71167 8.79278 9.18029 9.46442 10.93053 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.006016 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.469354 B = 4653.414869 C = 4789.501427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.706 5.706 14 C 0.506 3.494 15 O -0.554 6.554 16 C -0.113 4.113 17 H 0.102 0.898 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.098 3.902 22 H 0.060 0.940 23 N -0.844 5.844 24 H 0.021 0.979 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.263 0.737 30 H 0.388 0.612 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.336 0.664 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 4.340 -11.235 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.434 6.434 16 C -0.135 4.135 17 H 0.120 0.880 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.014 4.014 22 H 0.078 0.922 23 N -0.374 5.374 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.220 0.780 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.074 4.288 -11.043 13.798 hybrid contribution 0.850 -0.332 0.701 1.151 sum -6.223 3.955 -10.342 12.702 Atomic orbital electron populations 1.21834 0.98419 0.97926 1.01186 1.21927 0.92553 0.99902 1.02209 1.18769 0.94149 0.89149 0.81184 0.93456 1.21288 0.90801 1.38790 1.06223 0.92071 1.24894 0.98593 0.94840 0.95402 1.69912 1.35011 1.37766 1.09364 0.86410 0.84919 0.77762 0.78113 1.19743 1.20895 1.20884 1.46472 1.14724 1.55832 1.18253 1.20302 0.82628 0.79159 0.88850 1.90636 1.51485 1.60504 1.40777 1.22233 0.98187 0.98820 0.94232 0.87976 1.22451 1.00132 0.97909 0.94527 1.22308 0.96602 0.99338 0.97322 1.22209 0.97879 1.00701 0.94938 1.21831 0.94513 0.88501 0.96561 0.92234 1.58978 1.20381 1.15192 1.42819 0.95948 0.93261 0.94267 0.95086 0.88371 0.92654 0.78027 0.90796 0.91016 0.91754 0.91408 0.92073 0.91036 0.85230 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.05 8.73 -34.43 -0.30 -14.35 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.71 -14.49 4.98 -54.93 -0.27 -14.77 16 14 C 0.51 9.81 5.71 -10.98 -0.06 9.75 16 15 O -0.55 -12.60 12.57 5.56 0.07 -12.53 16 16 C -0.11 -1.67 2.90 -90.11 -0.26 -1.94 16 17 H 0.10 1.48 8.05 -51.93 -0.42 1.06 16 18 C -0.11 -1.41 6.31 -24.66 -0.16 -1.57 16 19 C -0.12 -1.26 6.83 -24.99 -0.17 -1.43 16 20 C -0.12 -1.36 6.59 -25.61 -0.17 -1.53 16 21 C 0.10 1.36 3.40 -66.60 -0.23 1.13 16 22 H 0.06 0.98 6.87 -51.92 -0.36 0.63 16 23 N -0.84 -10.71 9.10 -3.72 -0.03 -10.75 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 26 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.77 7.92 -51.93 -0.41 0.35 16 37 H 0.34 3.60 9.07 -39.29 -0.36 3.24 16 38 H 0.34 4.68 9.01 -39.29 -0.35 4.33 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -29.13 300.21 -7.68 -36.81 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.14 Total: 12.91 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.42 Total: -7.64 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.32 Total: -49.68 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.13 -7.68 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds