Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1 5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1 6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2 7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2 8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47013 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47356 * 119.99413 * 9 7 5 12 12 H 1.48498 * 109.47361 * 239.99879 * 9 7 5 13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 H 1.09007 * 110.43138 * 300.69962 * 16 14 13 18 18 C 1.54891 * 110.48798 * 63.23828 * 16 14 13 19 19 C 1.55032 * 102.68276 * 156.51885 * 18 16 14 20 20 C 1.54269 * 104.27775 * 322.23470 * 19 18 16 21 21 C 1.53872 * 106.60057 * 23.52240 * 20 19 18 22 22 H 1.09009 * 110.02865 * 240.71540 * 21 20 19 23 23 N 1.46901 * 110.07566 * 119.30525 * 21 20 19 24 24 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46445 * 299.99766 * 1 2 3 26 26 H 1.09000 * 109.47153 * 59.99728 * 1 2 3 27 27 H 1.09001 * 109.47180 * 240.00326 * 2 1 3 28 28 H 1.09000 * 109.47366 * 119.99762 * 2 1 3 29 29 H 0.97001 * 119.99446 * 179.97438 * 8 7 5 30 30 H 0.96995 * 120.00292 * 265.27526 * 13 3 2 31 31 H 1.08997 * 110.75538 * 274.93811 * 18 16 14 32 32 H 1.09001 * 110.75179 * 38.30792 * 18 16 14 33 33 H 1.08998 * 110.52114 * 203.48988 * 19 18 16 34 34 H 1.08999 * 110.47596 * 80.95993 * 19 18 16 35 35 H 1.08999 * 110.02896 * 264.23199 * 20 19 18 36 36 H 1.09001 * 110.02847 * 142.80306 * 20 19 18 37 37 H 1.00899 * 110.99486 * 62.80757 * 23 21 20 38 38 H 1.00899 * 111.00017 * 186.76262 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5989 1.5442 0.1930 11 1 6.4001 1.6156 2.6090 12 1 6.4963 -0.5190 1.4626 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 1 0.7255 4.1489 -2.8894 18 6 -0.0065 2.3103 -3.8130 19 6 -0.9733 2.9778 -4.8246 20 6 -2.0514 3.6389 -3.9411 21 6 -1.4095 3.8678 -2.5615 22 1 -1.9601 3.3185 -1.7978 23 7 -1.4003 5.3015 -2.2414 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8294 -0.0612 2.9498 30 1 2.2704 2.1197 -1.9991 31 1 0.9834 2.1796 -4.2500 32 1 -0.4071 1.3568 -3.4689 33 1 -1.4214 2.2281 -5.4766 34 1 -0.4488 3.7301 -5.4138 35 1 -2.9134 2.9785 -3.8470 36 1 -2.3560 4.5918 -4.3740 37 1 -2.3398 5.6636 -2.1769 38 1 -0.8852 5.4790 -1.3921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -83.342981 kcal Electronic energy + Delta-G solvation = -18096.249129 eV Core-core repulsion = 15357.413848 eV Total energy + Delta-G solvation = -2738.835281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13641 -38.62359 -36.78833 -34.36430 -33.52426 -32.81231 -30.29790 -28.62943 -27.36391 -25.05706 -23.05254 -21.71235 -21.09124 -20.41068 -18.96182 -17.79933 -17.22247 -16.57579 -16.33195 -16.24555 -15.84481 -15.35719 -14.77075 -14.61006 -14.29111 -13.91949 -13.44074 -13.23274 -12.97886 -12.89320 -12.71731 -12.54599 -12.15999 -12.15149 -12.01047 -11.94076 -11.80890 -11.59341 -11.41694 -11.04539 -10.61153 -10.45164 -9.63490 -9.58092 -8.16997 -6.34251 1.43187 1.44534 1.56262 1.88989 2.36141 2.67677 3.12548 3.53496 3.61688 3.73611 4.06311 4.35610 4.46811 4.50786 4.53642 4.54938 4.56656 4.74815 4.77735 4.87690 5.04881 5.06556 5.16670 5.20872 5.23328 5.28764 5.42510 5.46063 5.55819 5.64480 5.79076 5.93785 6.17039 6.20907 6.54607 6.74856 7.02715 7.33537 7.61914 8.88585 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.006016 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.469354 B = 4653.414869 C = 4789.501427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.591 6.591 16 C -0.104 4.104 17 H 0.112 0.888 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.114 4.114 21 C 0.096 3.904 22 H 0.028 0.972 23 N -0.839 5.839 24 H 0.044 0.956 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.347 0.653 38 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 4.691 -13.710 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.351 5.351 14 C 0.290 3.710 15 O -0.473 6.473 16 C -0.126 4.126 17 H 0.130 0.870 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.016 4.016 22 H 0.046 0.954 23 N -0.368 5.368 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.236 0.764 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.161 0.839 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.535 4.656 -13.565 15.761 hybrid contribution 0.622 -0.408 1.513 1.686 sum -5.914 4.248 -12.052 14.081 Atomic orbital electron populations 1.21664 0.97046 0.99029 1.00163 1.21772 0.93677 0.99247 1.01218 1.18343 0.93566 0.89134 0.81539 0.98685 1.21623 0.91515 1.38721 1.06621 0.91131 1.25777 1.03319 0.94394 0.95027 1.70064 1.36997 1.38509 1.09915 0.85327 0.79149 0.77845 0.78202 1.18439 1.21043 1.20410 1.46252 1.15677 1.55972 1.17224 1.21138 0.81534 0.78285 0.90048 1.90625 1.52400 1.61669 1.42615 1.22233 0.98836 0.99312 0.92177 0.86964 1.22496 1.01751 0.96643 0.93996 1.22300 0.95748 0.99879 0.96792 1.22190 0.98184 1.01612 0.93233 1.21829 0.93667 0.88630 0.97442 0.95424 1.59020 1.21178 1.14367 1.42260 0.93655 0.95810 0.93686 0.94033 0.91161 0.92639 0.76386 0.89124 0.92318 0.89884 0.90079 0.91554 0.89845 0.83945 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.30 2.24 44.25 0.10 14.40 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -29.01 8.73 25.60 0.22 -28.78 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.72 11.29 21.45 0.24 -52.48 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.70 -28.93 4.98 -446.08 -2.22 -31.15 16 14 C 0.50 19.62 5.71 87.66 0.50 20.12 16 15 O -0.59 -27.80 12.57 -3.03 -0.04 -27.84 16 16 C -0.10 -2.94 2.90 -10.47 -0.03 -2.97 16 17 H 0.11 3.01 8.05 -2.38 -0.02 2.99 16 18 C -0.11 -2.51 6.31 31.94 0.20 -2.31 16 19 C -0.11 -1.94 6.83 31.72 0.22 -1.73 16 20 C -0.11 -2.30 6.59 31.32 0.21 -2.09 16 21 C 0.10 2.58 3.40 45.64 0.16 2.74 16 22 H 0.03 0.93 6.87 -2.38 -0.02 0.91 16 23 N -0.84 -20.34 9.10 -165.67 -1.51 -21.84 16 24 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 26 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.40 14.17 8.54 -92.71 -0.79 13.38 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.50 8.05 -2.39 -0.02 1.48 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 37 H 0.35 7.01 9.07 -89.70 -0.81 6.20 16 38 H 0.34 9.08 9.01 -89.69 -0.81 8.27 16 Total: -1.00 -64.33 300.21 -0.04 -64.38 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -1.34 Total: 34.86 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 2.80 Total: -10.11 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.49 Total: -105.48 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.04 Total: -27.84 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.33 -0.04 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.966 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds