Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.08995 * 110.43400 * 300.70141 * 16 14 13 18 18 C 1.54889 * 110.48637 * 63.24394 * 16 14 13 19 19 C 1.54893 * 102.74681 * 156.61967 * 18 16 14 20 20 C 1.54267 * 104.19747 * 322.05609 * 19 18 16 21 21 C 1.54086 * 106.62059 * 23.72083 * 20 19 18 22 22 H 1.08998 * 110.00739 * 240.61975 * 21 20 19 23 23 N 1.46898 * 110.16211 * 119.11825 * 21 20 19 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 31 31 H 1.08998 * 110.75754 * 274.93520 * 18 16 14 32 32 H 1.09008 * 110.75413 * 38.30793 * 18 16 14 33 33 H 1.08995 * 110.48526 * 80.73560 * 19 18 16 34 34 H 1.08999 * 110.48232 * 203.24685 * 19 18 16 35 35 H 1.08996 * 110.03318 * 142.89325 * 20 19 18 36 36 H 1.08994 * 110.03051 * 264.27861 * 20 19 18 37 37 H 1.00897 * 110.99800 * 62.88349 * 23 21 20 38 38 H 1.00899 * 111.00391 * 186.84101 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 1 0.0744 2.6308 3.4823 18 6 0.9551 4.5533 2.9371 19 6 0.0825 5.4325 3.8671 20 6 -1.3442 5.2832 3.2998 21 6 -1.3750 3.9488 2.5299 22 1 -1.6129 4.1286 1.4815 23 7 -2.3683 3.0443 3.1240 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8771 0.4812 -2.1123 30 1 2.2717 2.1233 1.9977 31 1 1.8660 4.2385 3.4461 32 1 1.1904 5.0828 2.0138 33 1 0.1261 5.0639 4.8919 34 1 0.4060 6.4725 3.8226 35 1 -2.0690 5.2594 4.1135 36 1 -1.5667 6.1107 2.6261 37 1 -3.2979 3.4296 3.0505 38 1 -2.3219 2.1289 2.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082921727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = -54.228905 kcal Electronic energy + Delta-G solvation = -18154.145960 eV Core-core repulsion = 15416.573160 eV Total energy + Delta-G solvation = -2737.572800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82303 -37.47863 -35.20430 -32.79115 -32.26136 -31.53965 -29.11798 -27.29880 -26.40178 -22.82060 -21.84905 -20.63452 -19.71800 -19.19490 -17.52196 -16.30733 -15.84605 -15.43891 -15.21483 -14.85854 -14.31237 -13.86537 -13.73969 -13.39555 -12.89708 -12.34822 -12.16469 -11.88471 -11.74386 -11.55287 -11.14576 -11.06450 -11.00716 -10.92631 -10.78375 -10.61361 -10.58817 -9.93163 -9.56057 -9.23135 -9.04851 -8.75820 -8.59390 -8.04316 -6.21619 -4.23813 3.22001 3.26895 3.34401 3.39373 3.95972 4.30853 4.52897 4.57869 4.76064 5.03705 5.12054 5.40853 5.46690 5.56616 5.60218 5.69941 5.86726 5.92888 5.95472 6.00732 6.01421 6.09768 6.18106 6.23949 6.34200 6.64936 6.68814 6.84541 6.94503 7.20799 7.27444 7.31740 7.45835 7.52811 8.16518 8.55231 8.76165 8.97411 9.39679 10.90504 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.006800 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.780560 B = 4116.765237 C = 4627.871836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.261 1.261 12 H -0.294 1.294 13 N -0.698 5.698 14 C 0.508 3.492 15 O -0.556 6.556 16 C -0.112 4.112 17 H 0.104 0.896 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.097 3.903 22 H 0.060 0.940 23 N -0.844 5.844 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.337 0.663 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 5.302 9.147 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.186 1.186 12 H -0.222 1.222 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.435 6.435 16 C -0.134 4.134 17 H 0.122 0.878 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.014 4.014 22 H 0.078 0.922 23 N -0.373 5.373 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.418 5.335 9.023 15.500 hybrid contribution -0.427 -0.657 -1.380 1.587 sum -11.846 4.677 7.643 14.853 Atomic orbital electron populations 1.21862 0.97021 0.98943 1.02149 1.22280 0.94315 1.00049 1.01063 1.19134 0.95574 0.88453 0.83031 0.93465 1.21065 0.88663 1.39707 1.07792 0.90206 1.24839 0.94860 0.95170 0.97676 1.69872 1.08669 1.44544 1.29838 0.86900 0.80934 0.79937 0.80918 1.20265 1.18553 1.22178 1.46155 1.14907 1.55638 1.17822 1.20383 0.82443 0.78752 0.89128 1.90634 1.51690 1.60372 1.40846 1.22221 0.95882 0.98337 0.96930 0.87828 1.22445 0.97579 0.94897 1.00181 1.22286 0.94572 0.99609 0.99122 1.22240 0.97705 0.96100 0.99669 1.21875 0.90555 0.91786 0.97207 0.92223 1.58962 1.08329 1.06394 1.63620 0.92967 0.92993 0.95024 0.92845 0.92314 0.92307 0.77229 0.90605 0.90824 0.91369 0.91622 0.91032 0.92001 0.85142 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.70 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 5 C -0.53 -14.40 9.31 -34.44 -0.32 -14.72 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 9 Si 0.88 21.84 24.41 -169.99 -4.15 17.69 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.70 -13.63 4.99 -54.93 -0.27 -13.91 16 14 C 0.51 9.25 5.71 -10.99 -0.06 9.19 16 15 O -0.56 -11.78 12.57 5.56 0.07 -11.71 16 16 C -0.11 -1.56 2.90 -90.11 -0.26 -1.83 16 17 H 0.10 1.38 8.05 -51.93 -0.42 0.97 16 18 C -0.11 -1.39 6.29 -24.74 -0.16 -1.55 16 19 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 20 C -0.12 -1.30 6.60 -25.50 -0.17 -1.47 16 21 C 0.10 1.28 3.41 -66.48 -0.23 1.05 16 22 H 0.06 0.93 6.87 -51.93 -0.36 0.57 16 23 N -0.84 -9.88 9.11 -3.62 -0.03 -9.92 16 24 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 25 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.01 8.05 -51.92 -0.42 0.59 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 3.32 9.07 -39.29 -0.36 2.97 16 38 H 0.34 4.24 9.01 -39.29 -0.35 3.89 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -30.13 293.45 -6.62 -36.75 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.01 Total: 11.13 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.41 Total: -8.80 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.47 Total: -49.48 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.13 -6.62 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.481 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds