Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.08995 * 110.43400 * 300.70141 * 16 14 13 18 18 C 1.54889 * 110.48637 * 63.24394 * 16 14 13 19 19 C 1.54893 * 102.74681 * 156.61967 * 18 16 14 20 20 C 1.54267 * 104.19747 * 322.05609 * 19 18 16 21 21 C 1.54086 * 106.62059 * 23.72083 * 20 19 18 22 22 H 1.08998 * 110.00739 * 240.61975 * 21 20 19 23 23 N 1.46898 * 110.16211 * 119.11825 * 21 20 19 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 31 31 H 1.08998 * 110.75754 * 274.93520 * 18 16 14 32 32 H 1.09008 * 110.75413 * 38.30793 * 18 16 14 33 33 H 1.08995 * 110.48526 * 80.73560 * 19 18 16 34 34 H 1.08999 * 110.48232 * 203.24685 * 19 18 16 35 35 H 1.08996 * 110.03318 * 142.89325 * 20 19 18 36 36 H 1.08994 * 110.03051 * 264.27861 * 20 19 18 37 37 H 1.00897 * 110.99800 * 62.88349 * 23 21 20 38 38 H 1.00899 * 111.00391 * 186.84101 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 1 0.0744 2.6308 3.4823 18 6 0.9551 4.5533 2.9371 19 6 0.0825 5.4325 3.8671 20 6 -1.3442 5.2832 3.2998 21 6 -1.3750 3.9488 2.5299 22 1 -1.6129 4.1286 1.4815 23 7 -2.3683 3.0443 3.1240 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8771 0.4812 -2.1123 30 1 2.2717 2.1233 1.9977 31 1 1.8660 4.2385 3.4461 32 1 1.1904 5.0828 2.0138 33 1 0.1261 5.0639 4.8919 34 1 0.4060 6.4725 3.8226 35 1 -2.0690 5.2594 4.1135 36 1 -1.5667 6.1107 2.6261 37 1 -3.2979 3.4296 3.0505 38 1 -2.3219 2.1289 2.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082921727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -77.217661 kcal Electronic energy + Delta-G solvation = -18155.142828 eV Core-core repulsion = 15416.573160 eV Total energy + Delta-G solvation = -2738.569667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22257 -38.72538 -36.93133 -34.44594 -33.71288 -33.07972 -30.37737 -29.07765 -27.37535 -24.70566 -23.27309 -21.88572 -21.19893 -20.47489 -19.16179 -17.96292 -17.47956 -16.73509 -16.41776 -16.27678 -15.84752 -15.29873 -15.07727 -14.78099 -14.48524 -13.95702 -13.84058 -13.65212 -13.13492 -12.90418 -12.76927 -12.57328 -12.38585 -12.05441 -11.97687 -11.89421 -11.82953 -11.44909 -11.38888 -11.24630 -10.87686 -10.56694 -9.76772 -9.58175 -8.39619 -6.44731 1.24516 1.32699 1.42300 1.80071 2.24013 2.49054 2.96138 3.51174 3.61054 3.69940 4.03617 4.21265 4.28208 4.31740 4.46095 4.50069 4.52866 4.55977 4.75094 4.83454 4.86864 4.98595 5.05831 5.10590 5.16127 5.19987 5.20896 5.28277 5.40439 5.44434 5.50011 5.68367 6.13898 6.23028 6.56387 6.57841 6.91102 7.18665 7.48785 8.75616 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.006800 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.780560 B = 4116.765237 C = 4627.871836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.019 0.981 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.293 1.293 13 N -0.699 5.699 14 C 0.507 3.493 15 O -0.585 6.585 16 C -0.103 4.103 17 H 0.118 0.882 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.115 4.115 21 C 0.098 3.902 22 H 0.030 0.970 23 N -0.838 5.838 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.270 0.730 30 H 0.405 0.595 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.348 0.652 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.972 5.263 10.545 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.037 0.963 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.187 1.187 12 H -0.220 1.220 13 N -0.347 5.347 14 C 0.295 3.705 15 O -0.467 6.467 16 C -0.125 4.125 17 H 0.136 0.864 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.014 4.014 22 H 0.048 0.952 23 N -0.367 5.367 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.955 5.307 10.455 17.473 hybrid contribution 0.049 -0.584 -1.776 1.870 sum -12.906 4.723 8.680 16.254 Atomic orbital electron populations 1.21743 0.95156 1.00512 1.01507 1.22203 0.95920 0.98529 1.00960 1.18759 0.93137 0.89628 0.84040 0.96333 1.21306 0.90409 1.38461 1.06903 0.92538 1.25542 0.95719 0.95921 0.99827 1.69977 1.10211 1.46160 1.30865 0.86039 0.79221 0.79944 0.78429 1.18543 1.18747 1.22032 1.46016 1.15918 1.55953 1.16806 1.21112 0.81316 0.77800 0.90288 1.90623 1.52407 1.61217 1.42421 1.22230 0.96904 0.98838 0.94492 0.86422 1.22483 0.98238 0.94387 1.00130 1.22276 0.93393 1.00054 0.99069 1.22222 0.98530 0.94675 0.99829 1.21837 0.90264 0.93168 0.96146 0.95184 1.58985 1.08867 1.05992 1.62892 0.92565 0.94689 0.92281 0.93955 0.91323 0.92091 0.76057 0.89441 0.92616 0.90000 0.90163 0.89759 0.91639 0.83883 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.14 -5.95 5.11 30.59 0.16 -5.80 16 3 C 0.25 11.78 1.83 44.25 0.08 11.86 16 4 H 0.02 1.00 6.63 -2.39 -0.02 0.98 16 5 C -0.53 -29.11 9.31 25.60 0.24 -28.87 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.68 5.45 84.66 0.46 2.14 16 8 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 9 Si 0.94 45.17 24.41 68.60 1.67 46.84 16 10 H -0.26 -11.78 6.83 99.48 0.68 -11.10 16 11 H -0.26 -12.66 6.53 99.48 0.65 -12.01 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 N -0.70 -27.03 4.99 -446.09 -2.22 -29.26 16 14 C 0.51 18.18 5.71 87.66 0.50 18.68 16 15 O -0.59 -24.79 12.57 -3.04 -0.04 -24.83 16 16 C -0.10 -2.71 2.90 -10.46 -0.03 -2.74 16 17 H 0.12 2.83 8.05 -2.39 -0.02 2.81 16 18 C -0.11 -2.61 6.29 31.89 0.20 -2.41 16 19 C -0.11 -1.95 6.83 31.67 0.22 -1.74 16 20 C -0.11 -2.20 6.60 31.39 0.21 -1.99 16 21 C 0.10 2.41 3.41 45.71 0.16 2.57 16 22 H 0.03 0.93 6.87 -2.39 -0.02 0.91 16 23 N -0.84 -17.89 9.11 -165.37 -1.51 -19.40 16 24 H 0.06 2.09 5.64 -2.39 -0.01 2.08 16 25 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.92 3.22 -2.39 -0.01 1.91 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.40 13.96 8.54 -92.71 -0.79 13.17 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.48 8.05 -2.38 -0.02 1.46 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.35 6.14 9.07 -89.70 -0.81 5.32 16 38 H 0.34 7.80 9.01 -89.69 -0.81 6.99 16 Total: -1.00 -64.86 293.45 -0.41 -65.27 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -1.42 Total: 29.96 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 2.80 Total: -12.74 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -3.43 Total: -104.51 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -64.86 -0.41 -65.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082921727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.945 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds