Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47395 * 2 1 4 4 H 1.09002 * 109.46935 * 305.00686 * 3 2 1 5 5 C 1.52997 * 109.46940 * 65.00044 * 3 2 1 6 6 N 1.46900 * 109.47239 * 185.19159 * 5 3 2 7 7 C 1.50696 * 109.47592 * 185.00345 * 3 2 1 8 8 O 1.21283 * 119.99945 * 274.78295 * 7 3 2 9 9 N 1.34774 * 120.00343 * 94.77910 * 7 3 2 10 10 C 1.46496 * 120.00132 * 174.98350 * 9 7 3 11 11 C 1.50703 * 109.47129 * 90.00393 * 10 9 7 12 12 H 1.08002 * 119.99833 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99941 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00239 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00120 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46806 * 90.00282 * 15 13 11 17 17 H 1.48497 * 109.47489 * 210.00228 * 15 13 11 18 18 H 1.48503 * 109.47166 * 330.00377 * 15 13 11 19 19 C 1.46503 * 119.99771 * 354.98245 * 9 7 3 20 20 C 1.52999 * 117.50122 * 193.48242 * 19 9 7 21 21 C 1.53000 * 117.49932 * 124.82216 * 19 9 7 22 22 H 1.09005 * 109.46834 * 299.99599 * 1 2 3 23 23 H 1.08994 * 109.47329 * 59.99911 * 1 2 3 24 24 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46834 * 240.00401 * 2 1 3 26 26 H 1.09002 * 109.47389 * 120.00712 * 2 1 3 27 27 H 1.09005 * 109.47329 * 65.19411 * 5 3 2 28 28 H 1.08998 * 109.47472 * 305.19358 * 5 3 2 29 29 H 1.00903 * 110.99939 * 174.87912 * 6 5 3 30 30 H 1.00896 * 111.00241 * 298.83417 * 6 5 3 31 31 H 1.09007 * 109.46985 * 210.00187 * 10 9 7 32 32 H 1.09001 * 109.47224 * 330.00232 * 10 9 7 33 33 H 0.97001 * 120.00053 * 179.97438 * 14 13 11 34 34 H 1.08994 * 115.55031 * 339.15545 * 19 9 7 35 35 H 1.09007 * 117.49520 * 0.02562 * 20 19 9 36 36 H 1.08998 * 117.50245 * 145.02234 * 20 19 9 37 37 H 1.08995 * 117.50116 * 214.98296 * 21 19 9 38 38 H 1.09007 * 117.49706 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 7 2.0154 3.5445 1.2562 7 6 3.5419 1.4443 -0.1239 8 8 4.2322 1.3271 0.8664 9 7 4.1180 1.5762 -1.3351 10 6 5.5745 1.6885 -1.4452 11 6 6.1749 0.3137 -1.5888 12 1 5.5355 -0.5567 -1.5969 13 6 7.5406 0.1670 -1.7089 14 7 8.0647 -1.0328 -1.8337 15 14 8.6466 1.6723 -1.6942 16 1 9.0518 1.9752 -0.2980 17 1 9.8559 1.4062 -2.5139 18 1 7.9113 2.8324 -2.2590 19 6 3.2877 1.6071 -2.5417 20 6 3.9930 1.4403 -3.8892 21 6 3.4442 2.8084 -3.4764 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.1435 1.6440 2.1423 28 1 0.5568 2.0440 1.4419 29 1 1.6849 4.0371 2.0724 30 1 3.0135 3.6478 1.1510 31 1 5.8277 2.2886 -2.3192 32 1 5.9708 2.1662 -0.5492 33 1 9.0254 -1.1360 -1.9186 34 1 2.2918 1.1764 -2.4383 35 1 5.0748 1.3071 -3.8779 36 1 3.4609 0.9002 -4.6723 37 1 2.5514 3.1677 -3.9880 38 1 4.1647 3.5758 -3.1932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083604457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = -16.924145 kcal Electronic energy + Delta-G solvation = -18223.368885 eV Core-core repulsion = 15487.413741 eV Total energy + Delta-G solvation = -2735.955144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70218 -37.10009 -35.60226 -33.17676 -32.82885 -31.97220 -28.86735 -27.20027 -23.80501 -22.63636 -22.20473 -21.81670 -20.45010 -17.98026 -17.22296 -16.86159 -15.80571 -15.51126 -14.92133 -14.45933 -14.27622 -13.92297 -13.74840 -13.50216 -12.75178 -12.57080 -12.14123 -12.02936 -11.89993 -11.62398 -11.51763 -11.09881 -10.86326 -10.76512 -10.74062 -10.52518 -10.41526 -10.11615 -9.98862 -9.48248 -8.87812 -8.59460 -8.58711 -7.54954 -6.08048 -4.06021 3.25617 3.27753 3.33712 3.35738 3.74780 4.37574 4.39048 4.62228 4.80737 5.03240 5.21015 5.21764 5.24680 5.29630 5.41551 5.47151 5.51638 5.56614 5.74464 5.94491 5.97954 6.00695 6.04201 6.16146 6.24149 6.37690 6.41687 6.66630 6.75234 6.92750 7.20067 7.34770 7.50816 7.61045 8.28119 8.48170 8.94544 9.00373 9.52218 11.05334 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024001 B = 0.007832 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.315633 B = 3574.308055 C = 3764.059474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.107 4.107 4 H 0.095 0.905 5 C 0.075 3.925 6 N -0.852 5.852 7 C 0.518 3.482 8 O -0.543 6.543 9 N -0.563 5.563 10 C 0.214 3.786 11 C -0.521 4.521 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.078 3.922 20 C -0.176 4.176 21 C -0.202 4.202 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.337 0.663 30 H 0.345 0.655 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 6.720 0.065 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.129 4.129 4 H 0.113 0.887 5 C -0.056 4.056 6 N -0.381 5.381 7 C 0.305 3.695 8 O -0.421 6.421 9 N -0.292 5.292 10 C 0.094 3.906 11 C -0.559 4.559 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.028 4.028 20 C -0.214 4.214 21 C -0.241 4.241 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.225 6.581 -0.078 15.673 hybrid contribution 1.328 0.408 0.724 1.567 sum -12.896 6.989 0.646 14.683 Atomic orbital electron populations 1.21814 0.95296 1.01650 1.01858 1.21420 0.95869 0.94503 1.03454 1.21436 0.93515 0.97728 1.00254 0.88653 1.21684 0.99996 0.88188 0.95719 1.58801 1.20680 1.11946 1.46682 1.20302 0.89653 0.76470 0.83067 1.90663 1.65018 1.49696 1.36687 1.47428 1.07929 1.69865 1.03936 1.19651 0.75625 0.98320 0.97031 1.21282 0.92519 0.92015 1.50108 0.90693 1.24849 0.97798 0.95698 0.94668 1.69896 1.12003 1.21570 1.50089 0.86909 0.80743 0.83719 0.78683 1.19995 1.21023 1.19113 1.21515 0.95630 1.02122 0.83564 1.23378 1.03060 0.98352 0.96605 1.23391 1.03395 0.92617 1.04657 0.92546 0.92591 0.92565 0.91088 0.91157 0.94191 0.90553 0.85102 0.84238 0.95185 0.94857 0.92612 0.86207 0.86477 0.88768 0.88822 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 37.16 0.36 -1.16 16 2 C -0.11 -1.56 5.26 -26.73 -0.14 -1.70 16 3 C -0.11 -1.63 1.61 -91.78 -0.15 -1.78 16 4 H 0.10 1.34 6.45 -51.93 -0.33 1.01 16 5 C 0.08 1.04 5.85 -3.83 -0.02 1.01 16 6 N -0.85 -11.48 9.58 -10.37 -0.10 -11.58 16 7 C 0.52 10.59 5.84 -10.99 -0.06 10.52 16 8 O -0.54 -13.29 15.63 5.56 0.09 -13.21 16 9 N -0.56 -11.76 2.80 -167.47 -0.47 -12.23 16 10 C 0.21 5.26 3.46 -5.19 -0.02 5.24 16 11 C -0.52 -14.92 9.48 -34.44 -0.33 -15.25 16 12 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 15 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 16 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C 0.08 1.30 5.70 -67.93 -0.39 0.91 16 20 C -0.18 -2.89 9.73 -26.69 -0.26 -3.15 16 21 C -0.20 -2.95 10.03 -26.69 -0.27 -3.21 16 22 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.08 0.87 6.34 -51.93 -0.33 0.54 16 29 H 0.34 3.68 9.08 -39.29 -0.36 3.32 16 30 H 0.34 5.35 8.09 -39.29 -0.32 5.03 16 31 H 0.03 0.71 5.31 -51.93 -0.28 0.44 16 32 H 0.03 0.88 6.92 -51.93 -0.36 0.52 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.12 1.70 6.29 -51.93 -0.33 1.37 16 35 H 0.12 2.32 6.29 -51.93 -0.33 1.99 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.46 7.84 -51.92 -0.41 1.05 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -32.80 304.00 -7.05 -39.85 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.88 Total: 9.08 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.37 Total: -6.56 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.20 Total: -50.73 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.80 -7.05 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083604457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.929 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds