Wall clock time and date at job start Mon Mar 30 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47073 * 2 1 4 4 N 1.46496 * 109.46979 * 120.00323 * 2 1 3 5 5 C 1.34777 * 119.99985 * 154.99948 * 4 2 1 6 6 O 1.21583 * 119.99904 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.47427 * 125.64807 * 354.95233 * 7 5 4 9 9 C 1.54906 * 104.92647 * 204.09304 * 8 7 5 10 10 C 1.55279 * 101.53065 * 323.13163 * 9 8 7 11 11 C 1.47023 * 125.64506 * 174.97631 * 7 5 4 12 12 H 1.09006 * 109.88040 * 59.50651 * 11 7 5 13 13 C 1.52996 * 109.88344 * 298.49255 * 11 7 5 14 14 C 1.50707 * 109.46887 * 175.02500 * 13 11 7 15 15 H 1.08000 * 119.99712 * 4.89396 * 14 13 11 16 16 C 1.37868 * 119.99828 * 184.89770 * 14 13 11 17 17 N 1.31518 * 120.00476 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00118 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46907 * 59.99855 * 18 16 14 20 20 H 1.48495 * 109.47244 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46766 * 299.99881 * 18 16 14 22 22 H 1.09002 * 109.47584 * 299.99992 * 1 2 3 23 23 H 1.09002 * 109.47554 * 59.99641 * 1 2 3 24 24 H 1.09004 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46732 * 240.00343 * 2 1 3 26 26 H 1.09000 * 109.47590 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47629 * 300.00215 * 3 2 1 28 28 H 1.09007 * 109.47289 * 60.00202 * 3 2 1 29 29 H 0.97002 * 120.00115 * 334.99065 * 4 2 1 30 30 H 1.08996 * 110.36500 * 322.99104 * 8 7 5 31 31 H 1.09005 * 110.36332 * 85.20229 * 8 7 5 32 32 H 1.09003 * 111.00221 * 81.12060 * 9 8 7 33 33 H 1.09003 * 111.00489 * 204.97537 * 9 8 7 34 34 H 1.09005 * 110.61917 * 277.00924 * 10 9 8 35 35 H 1.08994 * 110.91190 * 153.85219 * 10 9 8 36 36 H 1.09000 * 109.47145 * 295.02452 * 13 11 7 37 37 H 1.08997 * 109.47061 * 55.02518 * 13 11 7 38 38 H 0.96993 * 120.00616 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2592 1.1943 6 8 3.9375 -1.1985 0.2001 7 7 3.6897 -1.8942 2.2949 8 6 2.9986 -1.9521 3.5959 9 6 4.1202 -2.2124 4.6322 10 6 5.0550 -3.1694 3.8440 11 6 4.9506 -2.6434 2.3970 12 1 5.7917 -1.9848 2.1804 13 6 4.9407 -3.8152 1.4133 14 6 6.2816 -4.5027 1.4375 15 1 7.0357 -4.1906 2.1450 16 6 6.5457 -5.5298 0.5566 17 7 5.6276 -5.9094 -0.3052 18 14 8.2080 -6.3815 0.5861 19 1 8.4290 -6.9895 1.9227 20 1 8.2386 -7.4435 -0.4514 21 1 9.2776 -5.3889 0.3108 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.4622 -0.7387 1.9895 30 1 2.5021 -1.0044 3.8041 31 1 2.2762 -2.7683 3.6056 32 1 4.6365 -1.2876 4.8897 33 1 3.7233 -2.6978 5.5239 34 1 4.6952 -4.1964 3.9079 35 1 6.0802 -3.0983 4.2072 36 1 4.1638 -4.5239 1.7002 37 1 4.7408 -3.4441 0.4082 38 1 5.8135 -6.6318 -0.9253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084476442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:35 Heat of formation + Delta-G solvation = -42.506003 kcal Electronic energy + Delta-G solvation = -17891.456658 eV Core-core repulsion = 15154.392201 eV Total energy + Delta-G solvation = -2737.064457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82272 -37.48884 -35.40696 -33.11618 -31.83652 -30.31375 -29.73016 -27.18864 -26.05350 -23.57789 -22.00047 -21.25207 -20.15666 -19.03882 -17.36822 -16.49040 -15.85700 -15.36277 -14.50912 -14.45260 -14.09995 -13.93818 -13.04550 -12.88823 -12.69349 -12.51966 -12.29503 -12.19552 -11.99069 -11.82583 -11.33575 -11.08678 -10.92741 -10.87707 -10.73935 -10.63026 -10.29984 -9.93853 -9.53279 -9.36597 -8.99427 -8.73445 -8.23549 -7.77868 -5.89408 -3.91850 3.11244 3.39238 3.43607 3.45955 3.82217 4.36682 4.55675 4.91397 4.95433 5.12366 5.23974 5.28315 5.33492 5.46158 5.56576 5.66469 5.74651 5.77653 5.86602 5.95351 5.97874 6.14711 6.19520 6.32330 6.34304 6.52357 6.80198 6.90173 6.96043 7.05965 7.51676 7.80389 7.96993 8.17466 8.47723 8.57187 9.12323 9.24509 9.70599 11.22130 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.006472 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.575077 B = 4325.005239 C = 5018.898964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 C -0.162 4.162 4 N -0.749 5.749 5 C 0.719 3.281 6 O -0.576 6.576 7 N -0.632 5.632 8 C 0.102 3.898 9 C -0.135 4.135 10 C -0.114 4.114 11 C 0.157 3.843 12 H 0.062 0.938 13 C 0.017 3.983 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.389 0.611 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.010 0.990 37 H 0.037 0.963 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.251 11.228 7.696 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 C -0.221 4.221 4 N -0.406 5.406 5 C 0.421 3.579 6 O -0.453 6.453 7 N -0.370 5.370 8 C -0.022 4.022 9 C -0.173 4.173 10 C -0.152 4.152 11 C 0.055 3.945 12 H 0.080 0.920 13 C -0.021 4.021 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.222 0.778 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.774 11.183 6.709 16.298 hybrid contribution 0.545 -0.569 0.373 0.871 sum -9.229 10.615 7.082 15.748 Atomic orbital electron populations 1.22064 0.94639 1.02514 1.02363 1.20709 0.93136 0.92483 0.88821 1.22204 1.02442 0.96158 1.01279 1.45282 1.17407 1.61088 1.16799 1.15446 0.81566 0.78181 0.82724 1.90943 1.56987 1.64761 1.32590 1.47886 1.24139 1.55426 1.09507 1.22152 0.95687 1.00167 0.84196 1.22793 0.96934 1.00319 0.97257 1.22626 0.99496 0.99259 0.93818 1.21758 0.82980 0.93834 0.95969 0.91995 1.19435 0.96767 0.90692 0.95175 1.21063 0.99296 1.16833 1.18150 0.92704 1.24995 0.96720 0.97213 0.95403 1.69978 1.33630 1.28860 1.20738 0.86670 0.84633 0.79190 0.77545 1.20311 1.21388 1.20262 0.92460 0.91157 0.91986 0.89395 0.91931 0.92064 0.93007 0.77772 0.92143 0.92100 0.91314 0.90596 0.90240 0.90697 0.97215 0.94421 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.38 37.16 0.35 -1.15 16 2 C 0.15 2.05 3.18 -67.94 -0.22 1.83 16 3 C -0.16 -1.96 9.48 37.15 0.35 -1.60 16 4 N -0.75 -11.24 5.03 -58.68 -0.30 -11.54 16 5 C 0.72 14.61 8.18 -86.92 -0.71 13.90 16 6 O -0.58 -14.55 15.17 5.29 0.08 -14.47 16 7 N -0.63 -12.11 3.07 -168.69 -0.52 -12.63 16 8 C 0.10 1.42 6.47 -2.53 -0.02 1.40 16 9 C -0.13 -1.78 7.10 -24.52 -0.17 -1.95 16 10 C -0.11 -2.00 5.94 -24.83 -0.15 -2.15 16 11 C 0.16 3.44 2.82 -66.95 -0.19 3.25 16 12 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.02 0.47 4.45 -27.88 -0.12 0.35 16 14 C -0.51 -14.92 8.70 -34.44 -0.30 -15.22 16 15 H 0.05 1.51 7.63 -52.49 -0.40 1.11 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -28.07 13.29 55.43 0.74 -27.34 16 18 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.39 4.67 7.21 -40.82 -0.29 4.38 16 30 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.01 0.28 8.03 -51.93 -0.42 -0.14 16 37 H 0.04 1.19 6.88 -51.93 -0.36 0.84 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -34.96 309.03 -8.07 -43.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.44 Total: 0.77 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.27 Total: 0.28 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.08 Total: -51.51 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.96 -8.07 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084476442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.530 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds