Wall clock time and date at job start Mon Mar 30 2020 04:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47073 * 2 1 4 4 N 1.46496 * 109.46979 * 120.00323 * 2 1 3 5 5 C 1.34777 * 119.99985 * 154.99948 * 4 2 1 6 6 O 1.21583 * 119.99904 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.47427 * 125.64807 * 354.95233 * 7 5 4 9 9 C 1.54906 * 104.92647 * 204.09304 * 8 7 5 10 10 C 1.55279 * 101.53065 * 323.13163 * 9 8 7 11 11 C 1.47023 * 125.64506 * 174.97631 * 7 5 4 12 12 H 1.09006 * 109.88040 * 59.50651 * 11 7 5 13 13 C 1.52996 * 109.88344 * 298.49255 * 11 7 5 14 14 C 1.50707 * 109.46887 * 175.02500 * 13 11 7 15 15 H 1.08000 * 119.99712 * 4.89396 * 14 13 11 16 16 C 1.37868 * 119.99828 * 184.89770 * 14 13 11 17 17 N 1.31518 * 120.00476 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00118 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46907 * 59.99855 * 18 16 14 20 20 H 1.48495 * 109.47244 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46766 * 299.99881 * 18 16 14 22 22 H 1.09002 * 109.47584 * 299.99992 * 1 2 3 23 23 H 1.09002 * 109.47554 * 59.99641 * 1 2 3 24 24 H 1.09004 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46732 * 240.00343 * 2 1 3 26 26 H 1.09000 * 109.47590 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47629 * 300.00215 * 3 2 1 28 28 H 1.09007 * 109.47289 * 60.00202 * 3 2 1 29 29 H 0.97002 * 120.00115 * 334.99065 * 4 2 1 30 30 H 1.08996 * 110.36500 * 322.99104 * 8 7 5 31 31 H 1.09005 * 110.36332 * 85.20229 * 8 7 5 32 32 H 1.09003 * 111.00221 * 81.12060 * 9 8 7 33 33 H 1.09003 * 111.00489 * 204.97537 * 9 8 7 34 34 H 1.09005 * 110.61917 * 277.00924 * 10 9 8 35 35 H 1.08994 * 110.91190 * 153.85219 * 10 9 8 36 36 H 1.09000 * 109.47145 * 295.02452 * 13 11 7 37 37 H 1.08997 * 109.47061 * 55.02518 * 13 11 7 38 38 H 0.96993 * 120.00616 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2402 -1.2592 1.1943 6 8 3.9375 -1.1985 0.2001 7 7 3.6897 -1.8942 2.2949 8 6 2.9986 -1.9521 3.5959 9 6 4.1202 -2.2124 4.6322 10 6 5.0550 -3.1694 3.8440 11 6 4.9506 -2.6434 2.3970 12 1 5.7917 -1.9848 2.1804 13 6 4.9407 -3.8152 1.4133 14 6 6.2816 -4.5027 1.4375 15 1 7.0357 -4.1906 2.1450 16 6 6.5457 -5.5298 0.5566 17 7 5.6276 -5.9094 -0.3052 18 14 8.2080 -6.3815 0.5861 19 1 8.4290 -6.9895 1.9227 20 1 8.2386 -7.4435 -0.4514 21 1 9.2776 -5.3889 0.3108 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.4622 -0.7387 1.9895 30 1 2.5021 -1.0044 3.8041 31 1 2.2762 -2.7683 3.6056 32 1 4.6365 -1.2876 4.8897 33 1 3.7233 -2.6978 5.5239 34 1 4.6952 -4.1964 3.9079 35 1 6.0802 -3.0983 4.2072 36 1 4.1638 -4.5239 1.7002 37 1 4.7408 -3.4441 0.4082 38 1 5.8135 -6.6318 -0.9253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084476442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:34 Heat of formation + Delta-G solvation = -67.360011 kcal Electronic energy + Delta-G solvation = -17892.534408 eV Core-core repulsion = 15154.392201 eV Total energy + Delta-G solvation = -2738.142207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33530 -38.91425 -36.79217 -35.26002 -33.34925 -31.99244 -31.14831 -28.07627 -27.90556 -25.29662 -23.74687 -22.41986 -21.50370 -20.61068 -18.94599 -18.45966 -17.32628 -16.97315 -16.41258 -15.76378 -15.53208 -15.16084 -14.70539 -14.43162 -14.01173 -13.88201 -13.84906 -13.51872 -13.14688 -13.05006 -12.90343 -12.76171 -12.56076 -12.30035 -12.20246 -11.99686 -11.85582 -11.52797 -11.43063 -11.24963 -11.04193 -10.54567 -10.16297 -9.34525 -8.18764 -6.30985 1.37855 1.43528 1.50599 1.71031 2.24640 2.41444 3.13798 3.14423 3.76497 3.87196 3.98734 4.14952 4.19477 4.34189 4.41746 4.58567 4.66036 4.75288 4.76577 4.89598 4.92734 4.98445 5.05400 5.11861 5.22847 5.23528 5.28632 5.35826 5.47481 5.51187 5.66680 5.69957 5.86994 6.10250 6.30719 6.85670 7.15043 7.37661 7.68662 8.93947 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.006472 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.575077 B = 4325.005239 C = 5018.898964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 C -0.154 4.154 4 N -0.727 5.727 5 C 0.707 3.293 6 O -0.640 6.640 7 N -0.638 5.638 8 C 0.094 3.906 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.160 3.840 12 H 0.036 0.964 13 C 0.031 3.969 14 C -0.531 4.531 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.256 1.256 20 H -0.285 1.285 21 H -0.270 1.270 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.408 0.592 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.083 0.917 36 H -0.015 1.015 37 H -0.021 1.021 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 12.159 10.464 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 C -0.212 4.212 4 N -0.385 5.385 5 C 0.409 3.591 6 O -0.521 6.521 7 N -0.375 5.375 8 C -0.028 4.028 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.007 4.007 14 C -0.570 4.570 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.180 1.180 20 H -0.211 1.211 21 H -0.195 1.195 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.245 0.755 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.003 0.997 37 H -0.002 1.002 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.629 12.140 9.546 18.748 hybrid contribution 0.728 -0.830 -0.543 1.230 sum -9.901 11.310 9.003 17.522 Atomic orbital electron populations 1.21995 0.90846 1.02915 1.04596 1.20930 0.95938 0.92537 0.86593 1.22128 0.99990 0.95554 1.03576 1.45128 1.15501 1.59744 1.18124 1.15849 0.82636 0.78422 0.82233 1.90892 1.59090 1.67057 1.35075 1.47893 1.23764 1.54472 1.11321 1.22543 0.96058 1.02692 0.81466 1.22803 0.95191 0.99926 0.97449 1.22525 1.01427 0.99536 0.91292 1.21452 0.83947 0.91500 0.97471 0.94539 1.19201 0.95698 0.92152 0.93696 1.21510 1.00056 1.16956 1.18455 0.91372 1.26089 1.01363 0.98097 0.94762 1.70157 1.36379 1.29632 1.21744 0.85415 0.78751 0.77853 0.78496 1.18049 1.21083 1.19515 0.89794 0.89300 0.92519 0.93457 0.95636 0.89892 0.90540 0.75512 0.88200 0.91249 0.89707 0.86825 0.91548 0.89818 0.99700 1.00212 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.38 71.98 0.68 -1.75 16 2 C 0.14 3.84 3.18 44.99 0.14 3.99 16 3 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 4 N -0.73 -21.60 5.03 -457.83 -2.31 -23.91 16 5 C 0.71 29.92 8.18 179.05 1.46 31.38 16 6 O -0.64 -34.96 15.17 -3.98 -0.06 -35.02 16 7 N -0.64 -24.75 3.07 -805.88 -2.47 -27.22 16 8 C 0.09 2.35 6.47 86.85 0.56 2.91 16 9 C -0.12 -2.62 7.10 32.03 0.23 -2.39 16 10 C -0.11 -3.74 5.94 31.83 0.19 -3.55 16 11 C 0.16 7.28 2.82 45.34 0.13 7.41 16 12 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 13 C 0.03 1.79 4.45 29.85 0.13 1.92 16 14 C -0.53 -31.93 8.70 25.60 0.22 -31.71 16 15 H 0.07 3.81 7.63 -2.91 -0.02 3.79 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.94 -61.62 13.29 21.44 0.28 -61.33 16 18 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.41 8.82 7.21 -92.71 -0.67 8.15 16 30 H 0.10 1.76 7.50 -2.39 -0.02 1.74 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.44 7.78 -2.38 -0.02 2.42 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H -0.02 -0.95 8.03 -2.39 -0.02 -0.97 16 37 H -0.02 -1.44 6.88 -2.39 -0.02 -1.45 16 38 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -84.47 309.03 2.72 -81.75 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.36 Total: 11.93 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 4.89 Total: 5.40 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.49 Total: -112.47 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -84.47 2.72 -81.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084476442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.388 kcal (2) G-P(sol) polarization free energy of solvation -84.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds