Wall clock time and date at job start Mon Mar 30 2020 03:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08990 * 109.47173 * 304.99823 * 3 2 1 5 5 C 1.50705 * 109.47260 * 184.99490 * 3 2 1 6 6 H 1.07991 * 119.99976 * 240.00314 * 5 3 2 7 7 C 1.37885 * 119.99592 * 60.00206 * 5 3 2 8 8 N 1.31512 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99577 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47456 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47049 * 120.00040 * 9 7 5 12 12 H 1.48499 * 109.47347 * 239.99866 * 9 7 5 13 13 N 1.46499 * 109.46843 * 65.00023 * 3 2 1 14 14 C 1.34784 * 119.99893 * 274.99901 * 13 3 2 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 3 17 17 H 1.08999 * 110.43365 * 302.53493 * 16 14 13 18 18 C 1.54884 * 110.49247 * 65.22423 * 16 14 13 19 19 C 1.54887 * 102.75045 * 156.61721 * 18 16 14 20 20 C 1.54260 * 104.19819 * 322.05870 * 19 18 16 21 21 H 1.09004 * 110.03288 * 264.32410 * 20 19 18 22 22 N 1.46902 * 110.07395 * 142.91508 * 20 19 18 23 23 C 1.53877 * 106.59871 * 23.61006 * 20 19 18 24 24 H 1.08997 * 109.47338 * 299.99975 * 1 2 3 25 25 H 1.08996 * 109.46997 * 60.00461 * 1 2 3 26 26 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47741 * 239.99846 * 2 1 3 28 28 H 1.09005 * 109.47114 * 120.00087 * 2 1 3 29 29 H 0.97008 * 119.99478 * 179.97438 * 8 7 5 30 30 H 0.97005 * 120.00261 * 95.00113 * 13 3 2 31 31 H 1.09000 * 110.75406 * 274.93847 * 18 16 14 32 32 H 1.09001 * 110.75288 * 38.29972 * 18 16 14 33 33 H 1.08997 * 110.48276 * 203.37842 * 19 18 16 34 34 H 1.08997 * 110.48226 * 80.73991 * 19 18 16 35 35 H 1.00894 * 110.99638 * 62.80939 * 22 20 19 36 36 H 1.00897 * 110.99765 * 186.76343 * 22 20 19 37 37 H 1.09004 * 110.02986 * 240.71940 * 23 20 19 38 38 H 1.08996 * 110.07282 * 119.30614 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1471 1.8888 0.6524 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5987 1.5462 -0.1940 11 1 6.4971 -0.5175 -1.4627 12 1 6.3992 1.6167 -2.6100 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3396 2.6318 0.4343 16 6 0.0341 3.3327 2.6567 17 1 0.1011 2.6293 3.4867 18 6 0.9204 4.5748 2.9222 19 6 0.0350 5.4325 3.8599 20 6 -1.3941 5.2391 3.3123 21 1 -1.6492 6.0562 2.6374 22 7 -2.3559 5.1840 4.4213 23 6 -1.3948 3.9039 2.5473 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8295 -0.0612 -2.9497 30 1 2.2719 2.1231 1.9979 31 1 1.8469 4.2888 3.4203 32 1 1.1281 5.1066 1.9937 33 1 0.3259 6.4815 3.8050 34 1 0.1029 5.0700 4.8855 35 1 -2.3673 6.0533 4.9334 36 1 -3.2787 4.9484 4.0883 37 1 -1.6501 4.0731 1.5012 38 1 -2.1082 3.2145 2.9987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085012785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:38 Heat of formation + Delta-G solvation = -83.064304 kcal Electronic energy + Delta-G solvation = -17860.133379 eV Core-core repulsion = 15121.310182 eV Total energy + Delta-G solvation = -2738.823197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04788 -38.72953 -36.81982 -34.34610 -33.72449 -32.55645 -29.88322 -29.02669 -27.41781 -25.01747 -23.14786 -21.62583 -21.00188 -20.46360 -18.92505 -17.74716 -17.18422 -16.74484 -16.29715 -16.13795 -15.99099 -15.21246 -14.90098 -14.60426 -14.46713 -13.71137 -13.53819 -13.21791 -12.97162 -12.77146 -12.69004 -12.43183 -12.12753 -12.09144 -12.02693 -11.95166 -11.81342 -11.65216 -11.57607 -11.02860 -10.59226 -10.42005 -9.59098 -9.56425 -8.15402 -6.32620 1.44148 1.45368 1.57166 1.92062 2.37559 2.71193 3.14104 3.55715 3.63248 3.67600 4.02735 4.38492 4.46372 4.48922 4.54388 4.56964 4.57229 4.65052 4.77301 4.92570 4.99595 5.06867 5.11115 5.23101 5.24735 5.27891 5.40076 5.44754 5.57259 5.66777 5.80855 5.95854 6.18477 6.30993 6.66271 6.76497 7.05731 7.35177 7.65382 8.90189 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.005803 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.791323 B = 4823.824393 C = 5390.151973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.591 6.591 16 C -0.103 4.103 17 H 0.114 0.886 18 C -0.109 4.109 19 C -0.107 4.107 20 C 0.089 3.911 21 H 0.037 0.963 22 N -0.845 5.845 23 C -0.104 4.104 24 H 0.043 0.957 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.350 0.650 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 8.329 13.632 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.473 6.473 16 C -0.124 4.124 17 H 0.132 0.868 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.023 4.023 21 H 0.055 0.945 22 N -0.377 5.377 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.073 0.927 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.571 7.620 13.072 16.124 hybrid contribution 0.514 0.474 -1.033 1.248 sum -5.057 8.095 12.039 15.363 Atomic orbital electron populations 1.21669 0.97055 0.99060 1.00194 1.21787 0.93697 0.99321 1.01228 1.18345 0.93625 0.89097 0.81604 0.98707 1.21621 0.91455 1.38703 1.06621 0.91035 1.25778 1.03300 0.94403 0.95045 1.70065 1.36990 1.38512 1.09910 0.85324 0.79166 0.77800 0.78200 1.18373 1.20502 1.21071 1.46259 1.15719 1.55914 1.17367 1.21163 0.81536 0.78050 0.90294 1.90623 1.52579 1.61286 1.42826 1.22108 0.97442 0.98603 0.94285 0.86837 1.22442 0.98472 0.94014 0.99801 1.22376 0.92263 1.00117 0.99685 1.21907 0.93814 0.95155 0.91386 0.94535 1.58851 1.11628 1.40373 1.26822 1.22055 0.95168 0.96913 1.00069 0.93752 0.95716 0.93623 0.91095 0.94069 0.92671 0.76321 0.89079 0.92673 0.90280 0.89410 0.83642 0.84115 0.92660 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.36 2.24 44.25 0.10 14.46 16 4 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 5 C -0.55 -28.99 8.73 25.60 0.22 -28.77 16 6 H 0.07 3.56 7.74 -2.92 -0.02 3.54 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.70 -29.20 5.01 -446.10 -2.24 -31.43 16 14 C 0.50 19.89 5.70 87.65 0.50 20.38 16 15 O -0.59 -28.45 12.56 -3.04 -0.04 -28.49 16 16 C -0.10 -2.91 3.25 -10.47 -0.03 -2.95 16 17 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.11 -2.55 6.31 31.88 0.20 -2.35 16 19 C -0.11 -1.97 6.53 31.67 0.21 -1.77 16 20 C 0.09 1.83 4.03 45.64 0.18 2.01 16 21 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 22 N -0.85 -13.93 9.11 -165.67 -1.51 -15.44 16 23 C -0.10 -2.81 5.92 31.32 0.19 -2.63 16 24 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 25 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 26 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 28 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.40 14.18 8.54 -92.70 -0.79 13.39 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.49 8.05 -2.39 -0.02 1.47 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 35 H 0.35 4.32 9.07 -89.70 -0.81 3.51 16 36 H 0.35 5.17 8.99 -89.70 -0.81 4.36 16 37 H 0.05 1.83 6.85 -2.38 -0.02 1.81 16 38 H 0.07 1.92 7.91 -2.39 -0.02 1.90 16 Total: -1.00 -65.63 300.17 -0.06 -65.69 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -1.34 Total: 29.41 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 2.79 Total: -11.33 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.50 Total: -99.47 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.04 Total: -28.49 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -65.63 -0.06 -65.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085012785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.376 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds