Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 N 1.46500 * 109.46824 * 119.99617 * 2 1 3 5 5 C 1.46504 * 119.99992 * 123.40825 * 4 2 1 6 6 C 1.50703 * 109.47119 * 258.92455 * 5 4 2 7 7 H 1.08002 * 119.99518 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00142 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99848 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99997 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47335 * 90.00226 * 10 8 6 12 12 H 1.48502 * 109.47027 * 210.00320 * 10 8 6 13 13 H 1.48503 * 109.47212 * 330.00055 * 10 8 6 14 14 C 1.34774 * 120.00246 * 303.39929 * 4 2 1 15 15 O 1.21581 * 119.99988 * 7.06676 * 14 4 2 16 16 N 1.34778 * 120.00182 * 187.05584 * 14 4 2 17 17 C 1.47024 * 125.64786 * 1.35174 * 16 14 4 18 18 C 1.54324 * 107.27165 * 181.32326 * 17 16 14 19 19 C 1.55152 * 102.94180 * 22.18769 * 18 17 16 20 20 C 1.47425 * 125.64860 * 181.65310 * 16 14 4 21 21 H 1.08997 * 109.46788 * 305.67076 * 1 2 3 22 22 H 1.08999 * 109.46667 * 65.67303 * 1 2 3 23 23 H 1.09001 * 109.46701 * 185.67556 * 1 2 3 24 24 H 1.08998 * 109.47119 * 239.99861 * 2 1 3 25 25 H 1.09003 * 109.46690 * 184.92694 * 3 2 1 26 26 H 1.09007 * 109.46933 * 304.92092 * 3 2 1 27 27 H 1.08993 * 109.47215 * 64.92511 * 3 2 1 28 28 H 1.09008 * 109.46898 * 18.91844 * 5 4 2 29 29 H 1.08993 * 109.47378 * 138.92239 * 5 4 2 30 30 H 0.96994 * 119.99702 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.87709 * 300.73924 * 17 16 14 32 32 H 1.09001 * 109.88681 * 61.89670 * 17 16 14 33 33 H 1.09008 * 110.71529 * 263.82530 * 18 17 16 34 34 H 1.08997 * 110.71985 * 140.55786 * 18 17 16 35 35 H 1.09002 * 111.00375 * 206.42756 * 19 18 17 36 36 H 1.09000 * 111.00619 * 82.57715 * 19 18 17 37 37 H 1.08999 * 110.36607 * 274.44678 * 20 16 14 38 38 H 1.09000 * 110.36720 * 36.65915 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9211 -1.8367 1.0632 6 6 2.1411 -3.1138 1.2414 7 1 1.0793 -3.0755 1.4349 8 6 2.7833 -4.3310 1.1586 9 7 2.1025 -5.4456 1.3136 10 14 4.6200 -4.3972 0.8247 11 1 5.3584 -4.3758 2.1129 12 1 4.9447 -5.6456 0.0888 13 1 5.0172 -3.2230 0.0069 14 6 1.6372 -0.2714 2.4191 15 8 0.7905 0.5943 2.5285 16 7 2.1944 -0.8120 3.5208 17 6 3.2439 -1.8415 3.5331 18 6 3.5424 -2.1740 5.0102 19 6 2.2474 -1.7235 5.7363 20 6 1.8480 -0.4734 4.9132 21 1 -0.3633 0.5993 0.8348 22 1 -0.3632 0.4233 -0.9364 23 1 -0.3633 -1.0227 0.1016 24 1 1.8934 -0.5138 -0.8899 25 1 3.1265 1.4437 -0.0883 26 1 1.6064 1.9812 -0.8427 27 1 1.7505 1.9302 0.9307 28 1 3.3790 -1.8256 0.0740 29 1 3.6989 -1.7768 1.8244 30 1 2.5544 -6.3019 1.2557 31 1 2.8931 -2.7345 3.0156 32 1 4.1433 -1.4599 3.0498 33 1 4.4020 -1.6065 5.3670 34 1 3.7048 -3.2440 5.1394 35 1 2.4530 -1.4589 6.7736 36 1 1.4779 -2.4931 5.6762 37 1 2.4156 0.3962 5.2446 38 1 0.7784 -0.2840 5.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091968375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = 4.668130 kcal Electronic energy + Delta-G solvation = -18882.363185 eV Core-core repulsion = 16147.344353 eV Total energy + Delta-G solvation = -2735.018833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92516 -37.19737 -35.39084 -33.31328 -31.97792 -30.16816 -28.48445 -27.42652 -26.56730 -23.45095 -21.99878 -21.34953 -20.43672 -18.53662 -17.11325 -16.19640 -15.85190 -15.11257 -14.67255 -14.36908 -13.83245 -13.24924 -12.99804 -12.96156 -12.71742 -12.63892 -12.29359 -12.14300 -11.78770 -11.52134 -11.31345 -10.97786 -10.90606 -10.78489 -10.62063 -10.57614 -10.31507 -10.20359 -9.69302 -9.41522 -8.94526 -8.73894 -8.01099 -7.31041 -6.25736 -4.22432 3.12210 3.22045 3.23603 3.43755 4.04420 4.21579 4.61061 5.02979 5.06775 5.15526 5.33686 5.52324 5.73992 5.74468 5.83580 5.87504 6.07847 6.12591 6.13275 6.20887 6.26553 6.36332 6.39507 6.50078 6.52668 6.61164 6.71690 6.75658 6.92041 7.05130 7.17593 7.44878 7.55596 7.90683 8.33167 8.79153 8.88097 9.30866 9.49099 10.86208 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.012740 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.674134 B = 2197.350108 C = 3229.462069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.166 3.834 3 C -0.164 4.164 4 N -0.608 5.608 5 C 0.171 3.829 6 C -0.528 4.528 7 H 0.078 0.922 8 C 0.075 3.925 9 N -0.887 5.887 10 Si 0.864 3.136 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.733 3.267 15 O -0.614 6.614 16 N -0.627 5.627 17 C 0.064 3.936 18 C -0.136 4.136 19 C -0.132 4.132 20 C 0.129 3.871 21 H 0.081 0.919 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.267 0.733 31 H 0.138 0.862 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 7.147 3.557 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 C -0.222 4.222 4 N -0.342 5.342 5 C 0.050 3.950 6 C -0.566 4.566 7 H 0.096 0.904 8 C -0.128 4.128 9 N -0.524 5.524 10 Si 0.690 3.310 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.437 3.563 15 O -0.496 6.496 16 N -0.364 5.364 17 C -0.057 4.057 18 C -0.174 4.174 19 C -0.170 4.170 20 C 0.005 3.995 21 H 0.100 0.900 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.489 7.428 3.503 8.923 hybrid contribution 1.065 -0.428 -0.296 1.186 sum 4.554 7.000 3.207 8.946 Atomic orbital electron populations 1.22248 0.95457 1.02832 1.01865 1.20687 0.94455 0.91751 0.86899 1.22205 1.00226 0.97148 1.02616 1.47049 1.51012 1.32986 1.03153 1.20850 0.90893 0.84684 0.98538 1.21407 0.97579 0.88714 1.48895 0.90395 1.24906 0.98002 0.95466 0.94476 1.69899 1.36177 0.97692 1.48618 0.87041 0.86093 0.78405 0.79502 1.19423 1.20808 1.18761 1.15299 0.80470 0.80701 0.79806 1.90730 1.36310 1.36755 1.85847 1.47292 1.41608 1.43121 1.04397 1.23322 0.90347 0.95868 0.96164 1.22710 0.97138 1.01654 0.95866 1.22749 0.98233 0.97809 0.98203 1.21889 1.00500 0.96357 0.80710 0.90028 0.93432 0.92527 0.90191 0.93432 0.92500 0.91256 0.95306 0.92553 0.92301 0.84522 0.92658 0.91923 0.90446 0.90741 0.90543 0.92800 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.92 37.16 0.33 -2.81 16 2 C 0.17 3.19 3.27 -67.93 -0.22 2.97 16 3 C -0.16 -2.73 9.23 37.16 0.34 -2.38 16 4 N -0.61 -13.25 2.45 -173.16 -0.42 -13.68 16 5 C 0.17 3.87 3.86 -5.19 -0.02 3.85 16 6 C -0.53 -13.77 7.42 -34.44 -0.26 -14.02 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.08 1.98 5.06 -17.82 -0.09 1.89 16 9 N -0.89 -25.15 13.96 55.43 0.77 -24.37 16 10 Si 0.86 19.20 27.38 -169.99 -4.65 14.54 16 11 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 14 C 0.73 16.50 7.57 -86.92 -0.66 15.84 16 15 O -0.61 -14.62 12.96 5.29 0.07 -14.55 16 16 N -0.63 -12.75 3.33 -179.24 -0.60 -13.35 16 17 C 0.06 1.24 4.86 -3.06 -0.01 1.22 16 18 C -0.14 -2.09 6.95 -24.90 -0.17 -2.26 16 19 C -0.13 -1.90 7.08 -24.59 -0.17 -2.07 16 20 C 0.13 2.17 6.90 -2.53 -0.02 2.15 16 21 H 0.08 1.68 5.95 -51.93 -0.31 1.38 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.47 7.68 -51.93 -0.40 1.07 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.07 1.29 6.56 -51.93 -0.34 0.95 16 28 H 0.03 0.65 6.79 -51.92 -0.35 0.29 16 29 H 0.06 1.23 2.80 -55.82 -0.16 1.08 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.14 3.11 3.84 -51.93 -0.20 2.91 16 32 H 0.06 1.04 6.31 -51.93 -0.33 0.71 16 33 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -29.48 289.60 -7.32 -36.80 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.90 Total: 5.86 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.95 Total: 4.38 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.25 Total: -51.40 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.65 Total: 14.54 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.48 -7.32 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091968375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.465 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds