Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 N 1.46500 * 109.46824 * 119.99617 * 2 1 3 5 5 C 1.46504 * 119.99992 * 123.40825 * 4 2 1 6 6 C 1.50703 * 109.47119 * 258.92455 * 5 4 2 7 7 H 1.08002 * 119.99518 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00142 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99848 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99997 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47335 * 90.00226 * 10 8 6 12 12 H 1.48502 * 109.47027 * 210.00320 * 10 8 6 13 13 H 1.48503 * 109.47212 * 330.00055 * 10 8 6 14 14 C 1.34774 * 120.00246 * 303.39929 * 4 2 1 15 15 O 1.21581 * 119.99988 * 7.06676 * 14 4 2 16 16 N 1.34778 * 120.00182 * 187.05584 * 14 4 2 17 17 C 1.47024 * 125.64786 * 1.35174 * 16 14 4 18 18 C 1.54324 * 107.27165 * 181.32326 * 17 16 14 19 19 C 1.55152 * 102.94180 * 22.18769 * 18 17 16 20 20 C 1.47425 * 125.64860 * 181.65310 * 16 14 4 21 21 H 1.08997 * 109.46788 * 305.67076 * 1 2 3 22 22 H 1.08999 * 109.46667 * 65.67303 * 1 2 3 23 23 H 1.09001 * 109.46701 * 185.67556 * 1 2 3 24 24 H 1.08998 * 109.47119 * 239.99861 * 2 1 3 25 25 H 1.09003 * 109.46690 * 184.92694 * 3 2 1 26 26 H 1.09007 * 109.46933 * 304.92092 * 3 2 1 27 27 H 1.08993 * 109.47215 * 64.92511 * 3 2 1 28 28 H 1.09008 * 109.46898 * 18.91844 * 5 4 2 29 29 H 1.08993 * 109.47378 * 138.92239 * 5 4 2 30 30 H 0.96994 * 119.99702 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.87709 * 300.73924 * 17 16 14 32 32 H 1.09001 * 109.88681 * 61.89670 * 17 16 14 33 33 H 1.09008 * 110.71529 * 263.82530 * 18 17 16 34 34 H 1.08997 * 110.71985 * 140.55786 * 18 17 16 35 35 H 1.09002 * 111.00375 * 206.42756 * 19 18 17 36 36 H 1.09000 * 111.00619 * 82.57715 * 19 18 17 37 37 H 1.08999 * 110.36607 * 274.44678 * 20 16 14 38 38 H 1.09000 * 110.36720 * 36.65915 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9211 -1.8367 1.0632 6 6 2.1411 -3.1138 1.2414 7 1 1.0793 -3.0755 1.4349 8 6 2.7833 -4.3310 1.1586 9 7 2.1025 -5.4456 1.3136 10 14 4.6200 -4.3972 0.8247 11 1 5.3584 -4.3758 2.1129 12 1 4.9447 -5.6456 0.0888 13 1 5.0172 -3.2230 0.0069 14 6 1.6372 -0.2714 2.4191 15 8 0.7905 0.5943 2.5285 16 7 2.1944 -0.8120 3.5208 17 6 3.2439 -1.8415 3.5331 18 6 3.5424 -2.1740 5.0102 19 6 2.2474 -1.7235 5.7363 20 6 1.8480 -0.4734 4.9132 21 1 -0.3633 0.5993 0.8348 22 1 -0.3632 0.4233 -0.9364 23 1 -0.3633 -1.0227 0.1016 24 1 1.8934 -0.5138 -0.8899 25 1 3.1265 1.4437 -0.0883 26 1 1.6064 1.9812 -0.8427 27 1 1.7505 1.9302 0.9307 28 1 3.3790 -1.8256 0.0740 29 1 3.6989 -1.7768 1.8244 30 1 2.5544 -6.3019 1.2557 31 1 2.8931 -2.7345 3.0156 32 1 4.1433 -1.4599 3.0498 33 1 4.4020 -1.6065 5.3670 34 1 3.7048 -3.2440 5.1394 35 1 2.4530 -1.4589 6.7736 36 1 1.4779 -2.4931 5.6762 37 1 2.4156 0.3962 5.2446 38 1 0.7784 -0.2840 5.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091968375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = -13.758534 kcal Electronic energy + Delta-G solvation = -18883.162226 eV Core-core repulsion = 16147.344353 eV Total energy + Delta-G solvation = -2735.817873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55661 -38.66728 -37.14298 -35.08554 -33.71509 -31.71839 -29.99224 -29.16031 -28.01831 -25.14185 -23.71998 -22.85368 -21.76064 -20.14411 -19.10979 -17.92828 -17.31809 -16.75064 -16.33627 -16.00899 -15.47940 -14.83698 -14.53983 -14.46757 -14.37370 -14.20883 -13.75770 -13.64716 -13.37679 -12.94337 -12.77793 -12.63380 -12.57814 -12.19882 -12.14049 -12.04820 -11.90960 -11.73776 -11.52076 -11.03627 -10.73472 -10.61437 -9.70089 -8.96394 -8.29342 -6.31383 1.39199 1.42058 1.51368 1.87171 2.33192 2.34165 3.02976 3.03471 3.77842 3.83358 4.04016 4.13059 4.27124 4.35903 4.38873 4.60405 4.65693 4.77699 4.78991 4.89300 4.91986 4.92387 4.95781 5.02067 5.04396 5.12500 5.24303 5.26804 5.39232 5.45654 5.51614 5.66778 5.90293 6.22058 6.34515 6.67239 7.11625 7.29757 7.77466 8.86836 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.012740 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.674134 B = 2197.350108 C = 3229.462069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.152 3.848 3 C -0.149 4.149 4 N -0.615 5.615 5 C 0.180 3.820 6 C -0.522 4.522 7 H 0.017 0.983 8 C 0.025 3.975 9 N -0.939 5.939 10 Si 0.931 3.069 11 H -0.246 1.246 12 H -0.287 1.287 13 H -0.243 1.243 14 C 0.720 3.280 15 O -0.635 6.635 16 N -0.635 5.635 17 C 0.058 3.942 18 C -0.128 4.128 19 C -0.121 4.121 20 C 0.121 3.879 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.023 0.977 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.269 0.731 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 8.364 3.937 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 C -0.207 4.207 4 N -0.349 5.349 5 C 0.058 3.942 6 C -0.560 4.560 7 H 0.036 0.964 8 C -0.174 4.174 9 N -0.578 5.578 10 Si 0.753 3.247 11 H -0.170 1.170 12 H -0.213 1.213 13 H -0.167 1.167 14 C 0.424 3.576 15 O -0.519 6.519 16 N -0.372 5.372 17 C -0.063 4.063 18 C -0.166 4.166 19 C -0.159 4.159 20 C -0.001 4.001 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.043 0.957 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.171 8.667 3.900 11.331 hybrid contribution 0.088 -0.805 -0.399 0.903 sum 6.259 7.861 3.500 10.641 Atomic orbital electron populations 1.22140 0.95819 1.00554 1.02891 1.21013 0.94330 0.93451 0.86351 1.22064 1.00976 0.95024 1.02664 1.47201 1.50996 1.32808 1.03908 1.20750 0.90867 0.83209 0.99336 1.21337 0.94954 0.90964 1.48780 0.96415 1.25733 1.03353 0.94505 0.93857 1.70063 1.38698 0.98553 1.50527 0.85970 0.79492 0.78744 0.80538 1.16989 1.21284 1.16655 1.15594 0.80598 0.80909 0.80547 1.90703 1.37159 1.37783 1.86287 1.47537 1.41599 1.42879 1.05195 1.23212 0.89997 0.94028 0.99055 1.22708 0.98578 1.02376 0.92907 1.22738 0.97221 0.95963 0.99967 1.22158 1.00097 0.98464 0.79430 0.91983 0.89903 0.95745 0.89254 0.92309 0.89534 0.93486 0.94466 0.90753 0.92200 0.88168 0.91696 0.88683 0.90203 0.86594 0.92336 0.90541 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 8.92 71.98 0.64 -5.34 16 2 C 0.15 5.73 3.27 44.99 0.15 5.88 16 3 C -0.15 -4.68 9.23 71.98 0.66 -4.02 16 4 N -0.61 -26.91 2.45 -820.04 -2.01 -28.92 16 5 C 0.18 8.03 3.86 85.63 0.33 8.36 16 6 C -0.52 -28.11 7.42 25.60 0.19 -27.92 16 7 H 0.02 1.14 8.06 -2.91 -0.02 1.11 16 8 C 0.02 1.32 5.06 84.65 0.43 1.75 16 9 N -0.94 -55.07 13.96 21.45 0.30 -54.77 16 10 Si 0.93 38.66 27.38 68.60 1.88 40.54 16 11 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 12 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 14 C 0.72 32.79 7.57 179.05 1.36 34.15 16 15 O -0.64 -30.86 12.96 -3.97 -0.05 -30.91 16 16 N -0.63 -25.63 3.33 -839.25 -2.79 -28.43 16 17 C 0.06 2.18 4.86 86.73 0.42 2.60 16 18 C -0.13 -3.55 6.95 31.78 0.22 -3.33 16 19 C -0.12 -3.20 7.08 31.98 0.23 -2.97 16 20 C 0.12 3.93 6.90 86.86 0.60 4.53 16 21 H 0.06 2.62 5.95 -2.39 -0.01 2.61 16 22 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 3.17 7.68 -2.39 -0.02 3.15 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.05 1.69 6.56 -2.39 -0.02 1.68 16 28 H 0.04 1.60 6.79 -2.38 -0.02 1.59 16 29 H 0.08 3.11 2.80 -6.04 -0.02 3.09 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.10 4.57 3.84 -2.38 -0.01 4.56 16 32 H 0.07 2.27 6.31 -2.39 -0.02 2.26 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 Total: -1.00 -67.49 289.60 3.52 -63.97 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.97 Total: 24.85 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.23 Total: 13.67 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -4.50 Total: -112.11 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.88 Total: 40.54 kcal Total: -67.49 3.52 -63.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091968375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.211 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds