Wall clock time and date at job start Mon Mar 30 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46984 * 2 1 4 4 N 1.46500 * 109.46819 * 180.02562 * 3 2 1 5 5 C 1.37186 * 119.99943 * 264.76581 * 4 3 2 6 6 H 1.08006 * 119.99663 * 141.79353 * 5 4 3 7 7 C 1.38875 * 120.00519 * 321.79941 * 5 4 3 8 8 N 1.31474 * 119.99887 * 338.31097 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 158.31262 * 7 5 4 10 10 H 1.48509 * 109.46943 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47363 * 119.99770 * 9 7 5 12 12 H 1.48507 * 109.47177 * 240.00406 * 9 7 5 13 13 C 1.34778 * 119.99932 * 84.77498 * 4 3 2 14 14 O 1.21577 * 120.00043 * 179.97438 * 13 4 3 15 15 N 1.34775 * 119.99818 * 359.97438 * 13 4 3 16 16 C 1.46507 * 120.00089 * 180.02562 * 15 13 4 17 17 C 1.54265 * 110.02921 * 272.90898 * 16 15 13 18 18 C 1.54966 * 104.15701 * 217.13152 * 17 16 15 19 19 C 1.54888 * 102.77687 * 37.88928 * 18 17 16 20 20 C 1.53871 * 110.03277 * 155.68654 * 16 15 13 21 21 H 1.09001 * 109.47541 * 299.99645 * 1 2 3 22 22 H 1.09000 * 109.47549 * 59.99834 * 1 2 3 23 23 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46829 * 240.00402 * 2 1 3 25 25 H 1.08991 * 109.47355 * 120.00300 * 2 1 3 26 26 H 1.09001 * 109.46692 * 59.99835 * 3 2 1 27 27 H 1.09000 * 109.47113 * 300.00433 * 3 2 1 28 28 H 0.96996 * 119.99913 * 179.97438 * 8 7 5 29 29 H 0.97004 * 120.00391 * 0.27591 * 15 13 4 30 30 H 1.09004 * 110.01076 * 34.30020 * 16 15 13 31 31 H 1.08993 * 110.48656 * 335.78072 * 17 16 15 32 32 H 1.09002 * 110.48407 * 98.43184 * 17 16 15 33 33 H 1.08998 * 110.72272 * 279.57924 * 18 17 16 34 34 H 1.08997 * 110.92198 * 156.29762 * 18 17 16 35 35 H 1.08997 * 110.49028 * 203.40292 * 19 18 17 36 36 H 1.08998 * 110.59929 * 80.81614 * 19 18 17 37 37 H 1.08996 * 110.03403 * 238.56657 * 20 16 15 38 38 H 1.09000 * 110.03500 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1914 1.5507 1.1822 6 1 5.0980 0.9837 1.3343 7 6 3.7206 2.3892 2.1842 8 7 2.9046 3.3760 1.8861 9 14 4.2466 2.1149 3.9555 10 1 5.1613 0.9470 4.0250 11 1 4.9481 3.3241 4.4564 12 1 3.0483 1.8550 4.7932 13 6 4.1783 1.3364 -1.1633 14 8 5.3941 1.3368 -1.1639 15 7 3.5039 1.2297 -2.3253 16 6 4.2358 1.1138 -3.5891 17 6 4.5635 2.5168 -4.1406 18 6 4.4035 2.3679 -5.6747 19 6 3.1817 1.4244 -5.8018 20 6 3.3580 0.4192 -4.6448 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6765 1.9563 0.8900 27 1 1.6765 1.9564 -0.8899 28 1 2.5755 3.9614 2.5860 29 1 2.5339 1.2334 -2.3252 30 1 5.1552 0.5481 -3.4372 31 1 3.8591 3.2529 -3.7534 32 1 5.5864 2.7964 -3.8883 33 1 5.2912 1.9113 -6.1125 34 1 4.1973 3.3318 -6.1399 35 1 3.1967 0.9079 -6.7614 36 1 2.2527 1.9822 -5.6843 37 1 3.8516 -0.4829 -5.0060 38 1 2.3872 0.1688 -4.2171 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094890669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:08 Heat of formation + Delta-G solvation = -41.591319 kcal Electronic energy + Delta-G solvation = -18101.287328 eV Core-core repulsion = 15364.262535 eV Total energy + Delta-G solvation = -2737.024793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.23947 -37.44286 -35.15034 -33.05082 -32.26267 -30.97871 -28.49798 -27.16385 -25.71193 -24.10743 -21.00350 -20.52693 -20.14575 -19.35386 -17.27498 -16.52260 -15.71484 -15.04136 -14.82511 -14.31735 -13.99737 -13.68277 -13.31759 -13.18080 -13.06668 -12.36640 -11.75037 -11.52234 -11.49608 -11.37466 -11.06124 -10.96885 -10.94200 -10.84836 -10.68222 -10.50824 -10.34898 -10.23596 -10.22351 -9.88138 -8.82565 -8.65825 -8.10229 -7.28860 -6.19005 -3.81610 3.24279 3.33270 3.39566 3.96690 4.41623 4.48475 4.79571 4.87921 5.05305 5.12857 5.42913 5.59461 5.62278 5.71975 5.73963 5.76940 5.82480 5.87039 5.96813 6.00109 6.05067 6.20010 6.21466 6.37432 6.40888 6.49989 6.56702 6.60985 6.64605 6.94791 7.29193 7.54321 7.69529 7.89314 8.54702 8.94385 9.39452 9.66636 10.31434 10.87829 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.007129 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.059492 B = 3926.414786 C = 4535.041356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.115 3.885 4 N -0.469 5.469 5 C -0.288 4.288 6 H 0.087 0.913 7 C 0.031 3.969 8 N -0.876 5.876 9 Si 0.915 3.085 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.669 3.331 14 O -0.618 6.618 15 N -0.756 5.756 16 C 0.163 3.837 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.131 4.131 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.386 0.614 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -4.070 -10.442 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.010 4.010 4 N -0.192 5.192 5 C -0.417 4.417 6 H 0.104 0.896 7 C -0.172 4.172 8 N -0.515 5.515 9 Si 0.742 3.258 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.372 3.628 14 O -0.499 6.499 15 N -0.414 5.414 16 C 0.057 3.943 17 C -0.174 4.174 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.169 4.169 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.221 0.779 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.496 -3.928 -10.280 11.888 hybrid contribution -0.386 0.055 0.893 0.975 sum -4.882 -3.874 -9.386 11.267 Atomic orbital electron populations 1.21687 0.96496 1.00610 1.01490 1.22017 0.94664 0.99636 1.01785 1.21403 0.82592 0.93916 1.03093 1.42688 1.03783 1.69186 1.03533 1.19288 1.09811 1.23569 0.89043 0.89574 1.25333 0.97835 0.93610 1.00391 1.70016 1.34335 1.14175 1.32995 0.86052 0.78356 0.78451 0.82923 1.19324 1.20980 1.20828 1.16421 0.85615 0.80424 0.80359 1.90714 1.12219 1.60918 1.86080 1.45457 1.08682 1.82213 1.05030 1.21206 0.95266 0.95245 0.82626 1.22836 1.02331 0.98105 0.94079 1.22487 0.97892 0.99147 0.96692 1.22333 0.98579 0.97246 0.97845 1.22446 1.00221 0.98460 0.95815 0.92753 0.93281 0.93511 0.93246 0.91660 0.87682 0.94237 0.92714 0.77900 0.89929 0.91336 0.91359 0.91664 0.91871 0.91966 0.91731 0.91299 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.58 6.16 -26.73 -0.16 -2.75 16 3 C 0.11 2.52 4.61 -4.04 -0.02 2.50 16 4 N -0.47 -12.20 2.53 -120.18 -0.30 -12.50 16 5 C -0.29 -8.24 8.88 -14.92 -0.13 -8.37 16 6 H 0.09 2.59 7.79 -52.48 -0.41 2.18 16 7 C 0.03 0.85 4.89 -17.47 -0.09 0.77 16 8 N -0.88 -24.34 11.62 55.49 0.64 -23.69 16 9 Si 0.92 21.19 29.60 -169.99 -5.03 16.15 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 C 0.67 17.09 8.19 -86.92 -0.71 16.38 16 14 O -0.62 -18.12 15.89 5.30 0.08 -18.03 16 15 N -0.76 -14.96 4.91 -57.58 -0.28 -15.24 16 16 C 0.16 2.76 3.23 -66.81 -0.22 2.54 16 17 C -0.13 -2.14 6.54 -25.03 -0.16 -2.31 16 18 C -0.12 -1.49 6.91 -24.70 -0.17 -1.66 16 19 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 20 C -0.13 -1.66 6.57 -25.61 -0.17 -1.83 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.11 2.57 5.66 -51.93 -0.29 2.27 16 27 H 0.04 0.80 6.64 -51.93 -0.35 0.46 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 6.84 5.93 -40.82 -0.24 6.60 16 30 H 0.08 1.57 7.59 -51.93 -0.39 1.17 16 31 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.83 7.61 -51.93 -0.40 0.43 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -31.80 305.56 -8.19 -39.99 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.27 Total: 6.70 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.63 Total: 2.02 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.06 Total: -51.43 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.08 Total: -18.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.80 -8.19 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.600 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds