Wall clock time and date at job start Mon Mar 30 2020 03:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46984 * 2 1 4 4 N 1.46500 * 109.46819 * 180.02562 * 3 2 1 5 5 C 1.37186 * 119.99943 * 264.76581 * 4 3 2 6 6 H 1.08006 * 119.99663 * 141.79353 * 5 4 3 7 7 C 1.38875 * 120.00519 * 321.79941 * 5 4 3 8 8 N 1.31474 * 119.99887 * 338.31097 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 158.31262 * 7 5 4 10 10 H 1.48509 * 109.46943 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47363 * 119.99770 * 9 7 5 12 12 H 1.48507 * 109.47177 * 240.00406 * 9 7 5 13 13 C 1.34778 * 119.99932 * 84.77498 * 4 3 2 14 14 O 1.21577 * 120.00043 * 179.97438 * 13 4 3 15 15 N 1.34775 * 119.99818 * 359.97438 * 13 4 3 16 16 C 1.46507 * 120.00089 * 180.02562 * 15 13 4 17 17 C 1.54265 * 110.02921 * 272.90898 * 16 15 13 18 18 C 1.54966 * 104.15701 * 217.13152 * 17 16 15 19 19 C 1.54888 * 102.77687 * 37.88928 * 18 17 16 20 20 C 1.53871 * 110.03277 * 155.68654 * 16 15 13 21 21 H 1.09001 * 109.47541 * 299.99645 * 1 2 3 22 22 H 1.09000 * 109.47549 * 59.99834 * 1 2 3 23 23 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46829 * 240.00402 * 2 1 3 25 25 H 1.08991 * 109.47355 * 120.00300 * 2 1 3 26 26 H 1.09001 * 109.46692 * 59.99835 * 3 2 1 27 27 H 1.09000 * 109.47113 * 300.00433 * 3 2 1 28 28 H 0.96996 * 119.99913 * 179.97438 * 8 7 5 29 29 H 0.97004 * 120.00391 * 0.27591 * 15 13 4 30 30 H 1.09004 * 110.01076 * 34.30020 * 16 15 13 31 31 H 1.08993 * 110.48656 * 335.78072 * 17 16 15 32 32 H 1.09002 * 110.48407 * 98.43184 * 17 16 15 33 33 H 1.08998 * 110.72272 * 279.57924 * 18 17 16 34 34 H 1.08997 * 110.92198 * 156.29762 * 18 17 16 35 35 H 1.08997 * 110.49028 * 203.40292 * 19 18 17 36 36 H 1.08998 * 110.59929 * 80.81614 * 19 18 17 37 37 H 1.08996 * 110.03403 * 238.56657 * 20 16 15 38 38 H 1.09000 * 110.03500 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1914 1.5507 1.1822 6 1 5.0980 0.9837 1.3343 7 6 3.7206 2.3892 2.1842 8 7 2.9046 3.3760 1.8861 9 14 4.2466 2.1149 3.9555 10 1 5.1613 0.9470 4.0250 11 1 4.9481 3.3241 4.4564 12 1 3.0483 1.8550 4.7932 13 6 4.1783 1.3364 -1.1633 14 8 5.3941 1.3368 -1.1639 15 7 3.5039 1.2297 -2.3253 16 6 4.2358 1.1138 -3.5891 17 6 4.5635 2.5168 -4.1406 18 6 4.4035 2.3679 -5.6747 19 6 3.1817 1.4244 -5.8018 20 6 3.3580 0.4192 -4.6448 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6765 1.9563 0.8900 27 1 1.6765 1.9564 -0.8899 28 1 2.5755 3.9614 2.5860 29 1 2.5339 1.2334 -2.3252 30 1 5.1552 0.5481 -3.4372 31 1 3.8591 3.2529 -3.7534 32 1 5.5864 2.7964 -3.8883 33 1 5.2912 1.9113 -6.1125 34 1 4.1973 3.3318 -6.1399 35 1 3.1967 0.9079 -6.7614 36 1 2.2527 1.9822 -5.6843 37 1 3.8516 -0.4829 -5.0060 38 1 2.3872 0.1688 -4.2171 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094890669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:07 Heat of formation + Delta-G solvation = -61.268643 kcal Electronic energy + Delta-G solvation = -18102.140600 eV Core-core repulsion = 15364.262535 eV Total energy + Delta-G solvation = -2737.878066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01801 -38.83855 -37.04582 -34.82076 -33.91399 -32.87027 -29.59848 -28.59194 -27.38806 -25.97280 -22.55520 -21.81967 -21.40406 -21.04031 -19.12687 -18.46489 -17.31240 -16.72235 -16.20241 -15.86879 -15.77852 -15.32838 -14.93297 -14.69919 -14.22169 -13.98030 -13.45046 -13.24603 -13.06151 -12.90352 -12.63002 -12.35535 -12.29598 -12.05724 -11.98670 -11.97281 -11.90537 -11.67695 -11.53853 -11.42905 -10.86580 -10.75322 -9.87243 -9.28138 -8.28504 -5.98924 1.39031 1.41614 1.55774 2.18994 2.48755 2.58082 3.09572 3.60289 3.70749 3.80794 4.05709 4.17565 4.34748 4.49444 4.54587 4.57423 4.61923 4.69363 4.72190 4.84281 4.95469 4.96813 5.09325 5.14182 5.22659 5.26257 5.29247 5.34585 5.39868 5.49364 5.51017 5.58529 5.95305 6.05992 6.42351 6.96011 7.32098 7.71062 8.29578 8.76942 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.007129 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.059492 B = 3926.414786 C = 4535.041356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.117 3.883 4 N -0.481 5.481 5 C -0.323 4.323 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.896 5.896 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.263 1.263 13 C 0.657 3.343 14 O -0.668 6.668 15 N -0.738 5.738 16 C 0.153 3.847 17 C -0.137 4.137 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.122 4.122 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.270 0.730 29 H 0.399 0.601 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 -4.627 -11.646 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.007 4.007 4 N -0.205 5.205 5 C -0.452 4.452 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.534 5.534 9 Si 0.805 3.195 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.188 1.188 13 C 0.360 3.640 14 O -0.553 6.553 15 N -0.396 5.396 16 C 0.047 3.953 17 C -0.176 4.176 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.160 4.160 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.236 0.764 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.601 -4.487 -11.523 14.017 hybrid contribution 0.281 0.273 1.247 1.307 sum -6.319 -4.215 -10.276 12.779 Atomic orbital electron populations 1.21634 0.93116 1.02454 1.02238 1.21887 0.97434 0.96589 1.01142 1.21491 0.80258 0.96384 1.02533 1.42900 1.05347 1.69119 1.03108 1.19213 1.10175 1.24729 0.91068 0.92537 1.26086 0.97567 0.92767 1.03893 1.70080 1.34583 1.14322 1.34438 0.85076 0.78498 0.78082 0.77845 1.19662 1.20616 1.18808 1.16727 0.85263 0.80352 0.81662 1.90656 1.14533 1.63115 1.87031 1.45296 1.09200 1.80743 1.04334 1.21504 0.95171 0.96148 0.82471 1.22792 1.00198 0.97006 0.97628 1.22463 0.99178 1.00621 0.92993 1.22333 0.98075 0.96487 0.98232 1.22409 0.99683 0.99059 0.94845 0.93208 0.91368 0.91115 0.92523 0.93705 0.90073 0.92752 0.92075 0.76446 0.92790 0.92706 0.94139 0.90691 0.90296 0.89121 0.90931 0.89800 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.13 -4.68 6.16 30.60 0.19 -4.49 16 3 C 0.12 5.16 4.61 86.38 0.40 5.56 16 4 N -0.48 -25.91 2.53 -652.39 -1.65 -27.56 16 5 C -0.32 -19.21 8.88 84.01 0.75 -18.47 16 6 H 0.06 3.61 7.79 -2.91 -0.02 3.59 16 7 C 0.00 -0.09 4.89 84.90 0.41 0.33 16 8 N -0.90 -50.21 11.62 21.65 0.25 -49.96 16 9 Si 0.98 43.99 29.60 68.60 2.03 46.02 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.66 34.93 8.19 179.05 1.47 36.40 16 14 O -0.67 -41.44 15.89 -3.96 -0.06 -41.50 16 15 N -0.74 -29.51 4.91 -454.35 -2.23 -31.74 16 16 C 0.15 5.18 3.23 45.71 0.15 5.32 16 17 C -0.14 -4.42 6.54 31.70 0.21 -4.21 16 18 C -0.11 -2.49 6.91 31.91 0.22 -2.27 16 19 C -0.11 -2.06 6.83 31.67 0.22 -1.85 16 20 C -0.12 -2.76 6.57 31.32 0.21 -2.56 16 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.91 7.97 -2.39 -0.02 1.90 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 4.00 5.66 -2.39 -0.01 3.99 16 27 H 0.05 2.17 6.64 -2.39 -0.02 2.16 16 28 H 0.27 14.08 8.31 -92.71 -0.77 13.30 16 29 H 0.40 13.77 5.93 -92.71 -0.55 13.22 16 30 H 0.05 2.14 7.59 -2.39 -0.02 2.12 16 31 H 0.05 1.89 8.05 -2.39 -0.02 1.87 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.64 7.61 -2.39 -0.02 1.63 16 Total: -1.00 -72.65 305.56 3.75 -68.90 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.48 Total: 24.99 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 4.93 Total: 10.86 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -3.63 Total: -109.26 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.06 Total: -41.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.65 3.75 -68.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.631 kcal (2) G-P(sol) polarization free energy of solvation -72.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds