Wall clock time and date at job start Mon Mar 30 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46983 * 2 1 4 4 N 1.46491 * 109.47225 * 120.00077 * 2 1 3 5 5 C 1.46500 * 120.00048 * 294.32154 * 4 2 1 6 6 C 1.50705 * 109.47220 * 89.99764 * 5 4 2 7 7 H 1.08005 * 119.99701 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99925 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99740 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00236 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47278 * 89.99424 * 10 8 6 12 12 H 1.48498 * 109.46908 * 209.99714 * 10 8 6 13 13 H 1.48505 * 109.46678 * 329.99479 * 10 8 6 14 14 C 1.34776 * 120.00041 * 114.32182 * 4 2 1 15 15 O 1.21287 * 119.99700 * 184.48007 * 14 4 2 16 16 C 1.50692 * 120.00100 * 4.47759 * 14 4 2 17 17 C 1.53007 * 115.55404 * 288.98408 * 16 14 4 18 18 N 1.46895 * 109.46900 * 302.72135 * 17 16 14 19 19 C 1.53001 * 117.50072 * 143.31420 * 16 14 4 20 20 C 1.53004 * 117.49907 * 74.65673 * 16 14 4 21 21 H 1.08993 * 109.47490 * 300.00114 * 1 2 3 22 22 H 1.09005 * 109.47493 * 60.00667 * 1 2 3 23 23 H 1.09009 * 109.47009 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46892 * 240.00174 * 2 1 3 25 25 H 1.08996 * 109.47484 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47071 * 300.00405 * 3 2 1 27 27 H 1.09002 * 109.46975 * 59.99839 * 3 2 1 28 28 H 1.08999 * 109.47176 * 209.99702 * 5 4 2 29 29 H 1.09003 * 109.47357 * 329.99847 * 5 4 2 30 30 H 0.97001 * 120.00009 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46482 * 62.71736 * 17 16 14 32 32 H 1.08993 * 109.47292 * 182.71850 * 17 16 14 33 33 H 1.00904 * 110.99896 * 184.69617 * 18 17 16 34 34 H 1.00905 * 111.00394 * 308.65170 * 18 17 16 35 35 H 1.09001 * 117.49724 * 359.97438 * 19 16 14 36 36 H 1.08996 * 117.50139 * 145.02185 * 19 16 14 37 37 H 1.09000 * 117.49573 * 214.98270 * 20 16 14 38 38 H 1.09003 * 117.49463 * 359.96907 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7699 -0.1218 2.5231 6 6 0.4639 -0.6493 3.0593 7 1 -0.1221 -1.3395 2.4706 8 6 0.0179 -0.2514 4.3018 9 7 -1.1215 -0.7122 4.7699 10 14 1.0318 0.9419 5.3202 11 1 0.6243 2.3341 5.0027 12 1 0.8057 0.6768 6.7638 13 1 2.4717 0.7632 5.0038 14 6 2.6962 -1.8492 1.0757 15 8 3.0297 -2.4625 2.0675 16 6 3.0397 -2.3827 -0.2911 17 6 1.8608 -2.9193 -1.1056 18 7 1.1861 -3.9821 -0.3486 19 6 4.3900 -3.0827 -0.4575 20 6 4.1701 -1.6911 -1.0559 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 2.5794 -0.4034 3.1965 29 1 1.7200 0.9646 2.4492 30 1 -1.4356 -0.4321 5.6439 31 1 1.1571 -2.1105 -1.3023 32 1 2.2254 -3.3217 -2.0506 33 1 0.4515 -4.4053 -0.8958 34 1 1.8468 -4.6760 -0.0320 35 1 5.0301 -3.1569 0.4217 36 1 4.4386 -3.9252 -1.1473 37 1 4.0740 -1.6186 -2.1392 38 1 4.6649 -0.8498 -0.5705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168690063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:42 Heat of formation + Delta-G solvation = -6.994748 kcal Electronic energy + Delta-G solvation = -18600.721922 eV Core-core repulsion = 15865.197349 eV Total energy + Delta-G solvation = -2735.524573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85362 -36.83797 -35.80146 -33.19316 -32.59112 -30.86568 -28.18320 -26.74994 -25.54455 -23.17346 -22.49283 -21.67804 -20.25686 -17.88786 -16.74259 -16.53263 -15.76466 -15.30919 -14.67720 -14.25935 -14.17361 -13.74687 -13.45400 -13.23980 -12.81208 -12.45091 -12.37944 -11.95805 -11.65889 -11.56606 -11.48504 -11.43314 -10.85419 -10.79050 -10.45768 -10.35784 -10.16441 -10.02891 -9.95457 -9.31754 -8.86991 -8.46627 -8.38896 -7.54338 -5.95710 -3.91470 3.32656 3.37583 3.41492 3.45747 3.75019 3.95900 4.49661 4.52616 4.83486 4.93015 5.01565 5.28397 5.32360 5.36992 5.53529 5.59248 5.60538 5.66743 5.84351 5.87449 5.94174 6.05519 6.16654 6.20915 6.34233 6.40033 6.62426 6.85974 7.09455 7.11504 7.29581 7.54383 7.63671 7.75386 8.45800 8.62655 9.12151 9.19277 9.65562 11.17768 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.008516 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.562562 B = 3286.955704 C = 3399.236024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.163 4.163 4 N -0.581 5.581 5 C 0.215 3.785 6 C -0.513 4.513 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.558 3.442 15 O -0.536 6.536 16 C -0.151 4.151 17 C 0.105 3.895 18 N -0.838 5.838 19 C -0.151 4.151 20 C -0.162 4.162 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.340 0.660 34 H 0.343 0.657 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 0.189 -15.380 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.312 5.312 5 C 0.095 3.905 6 C -0.551 4.551 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.696 3.304 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.344 3.656 15 O -0.412 6.412 16 C -0.155 4.155 17 C -0.026 4.026 18 N -0.369 5.369 19 C -0.188 4.188 20 C -0.200 4.200 21 H 0.100 0.900 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.626 0.476 -14.157 16.087 hybrid contribution 0.611 0.007 -0.130 0.625 sum 8.237 0.483 -14.287 16.499 Atomic orbital electron populations 1.22193 0.94681 1.02811 1.02129 1.21036 0.95078 0.92672 0.88173 1.22181 1.00762 0.96803 1.02390 1.47821 1.53387 1.22262 1.07730 1.19622 0.97986 0.93240 0.79665 1.21390 1.03655 1.27586 1.02510 0.90157 1.24857 0.94854 0.96277 0.97217 1.69904 1.20531 1.44653 1.18792 0.86956 0.81602 0.81596 0.80229 1.20305 1.21123 1.19032 1.18930 0.78119 0.80496 0.88092 1.90652 1.54760 1.56983 1.38832 1.21561 0.91333 1.05616 0.96947 1.21349 0.93657 0.95433 0.92183 1.58456 1.16559 1.17082 1.44763 1.22970 0.97632 0.95292 1.02950 1.23051 1.00767 0.96696 0.99501 0.90047 0.93564 0.92210 0.90208 0.92979 0.92175 0.91523 0.94725 0.95653 0.92842 0.89845 0.95480 0.84743 0.84357 0.87950 0.88619 0.88257 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.31 37.16 0.31 -2.49 16 2 C 0.13 2.24 2.58 -67.94 -0.18 2.07 16 3 C -0.16 -2.36 9.05 37.16 0.34 -2.03 16 4 N -0.58 -12.30 2.39 -167.48 -0.40 -12.70 16 5 C 0.22 5.39 3.77 -5.19 -0.02 5.37 16 6 C -0.51 -14.91 8.41 -34.44 -0.29 -15.20 16 7 H 0.08 2.59 7.83 -52.48 -0.41 2.18 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 10 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 14 C 0.56 11.88 6.64 -10.99 -0.07 11.81 16 15 O -0.54 -13.92 16.47 5.55 0.09 -13.83 16 16 C -0.15 -2.32 0.90 -155.66 -0.14 -2.46 16 17 C 0.10 1.41 6.31 -3.82 -0.02 1.39 16 18 N -0.84 -12.43 9.40 -10.37 -0.10 -12.53 16 19 C -0.15 -1.97 9.78 -26.69 -0.26 -2.23 16 20 C -0.16 -1.94 9.26 -26.69 -0.25 -2.18 16 21 H 0.08 1.69 6.93 -51.93 -0.36 1.33 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.14 7.80 -51.92 -0.40 0.73 16 24 H 0.08 1.14 4.27 -51.93 -0.22 0.92 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.08 6.50 -51.93 -0.34 0.74 16 28 H 0.03 0.95 6.54 -51.93 -0.34 0.61 16 29 H 0.03 0.60 5.57 -51.93 -0.29 0.31 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.08 1.15 5.53 -51.93 -0.29 0.87 16 32 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 33 H 0.34 4.07 9.08 -39.29 -0.36 3.72 16 34 H 0.34 4.94 8.93 -39.29 -0.35 4.59 16 35 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -34.72 303.26 -6.32 -41.04 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.90 Total: 7.55 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.68 Total: -3.99 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.71 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.72 -6.32 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168690063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.042 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds