Wall clock time and date at job start Mon Mar 30 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46983 * 2 1 4 4 N 1.46491 * 109.47225 * 120.00077 * 2 1 3 5 5 C 1.46500 * 120.00048 * 294.32154 * 4 2 1 6 6 C 1.50705 * 109.47220 * 89.99764 * 5 4 2 7 7 H 1.08005 * 119.99701 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99925 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99740 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00236 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47278 * 89.99424 * 10 8 6 12 12 H 1.48498 * 109.46908 * 209.99714 * 10 8 6 13 13 H 1.48505 * 109.46678 * 329.99479 * 10 8 6 14 14 C 1.34776 * 120.00041 * 114.32182 * 4 2 1 15 15 O 1.21287 * 119.99700 * 184.48007 * 14 4 2 16 16 C 1.50692 * 120.00100 * 4.47759 * 14 4 2 17 17 C 1.53007 * 115.55404 * 288.98408 * 16 14 4 18 18 N 1.46895 * 109.46900 * 302.72135 * 17 16 14 19 19 C 1.53001 * 117.50072 * 143.31420 * 16 14 4 20 20 C 1.53004 * 117.49907 * 74.65673 * 16 14 4 21 21 H 1.08993 * 109.47490 * 300.00114 * 1 2 3 22 22 H 1.09005 * 109.47493 * 60.00667 * 1 2 3 23 23 H 1.09009 * 109.47009 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46892 * 240.00174 * 2 1 3 25 25 H 1.08996 * 109.47484 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47071 * 300.00405 * 3 2 1 27 27 H 1.09002 * 109.46975 * 59.99839 * 3 2 1 28 28 H 1.08999 * 109.47176 * 209.99702 * 5 4 2 29 29 H 1.09003 * 109.47357 * 329.99847 * 5 4 2 30 30 H 0.97001 * 120.00009 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46482 * 62.71736 * 17 16 14 32 32 H 1.08993 * 109.47292 * 182.71850 * 17 16 14 33 33 H 1.00904 * 110.99896 * 184.69617 * 18 17 16 34 34 H 1.00905 * 111.00394 * 308.65170 * 18 17 16 35 35 H 1.09001 * 117.49724 * 359.97438 * 19 16 14 36 36 H 1.08996 * 117.50139 * 145.02185 * 19 16 14 37 37 H 1.09000 * 117.49573 * 214.98270 * 20 16 14 38 38 H 1.09003 * 117.49463 * 359.96907 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7699 -0.1218 2.5231 6 6 0.4639 -0.6493 3.0593 7 1 -0.1221 -1.3395 2.4706 8 6 0.0179 -0.2514 4.3018 9 7 -1.1215 -0.7122 4.7699 10 14 1.0318 0.9419 5.3202 11 1 0.6243 2.3341 5.0027 12 1 0.8057 0.6768 6.7638 13 1 2.4717 0.7632 5.0038 14 6 2.6962 -1.8492 1.0757 15 8 3.0297 -2.4625 2.0675 16 6 3.0397 -2.3827 -0.2911 17 6 1.8608 -2.9193 -1.1056 18 7 1.1861 -3.9821 -0.3486 19 6 4.3900 -3.0827 -0.4575 20 6 4.1701 -1.6911 -1.0559 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 2.5794 -0.4034 3.1965 29 1 1.7200 0.9646 2.4492 30 1 -1.4356 -0.4321 5.6439 31 1 1.1571 -2.1105 -1.3023 32 1 2.2254 -3.3217 -2.0506 33 1 0.4515 -4.4053 -0.8958 34 1 1.8468 -4.6760 -0.0320 35 1 5.0301 -3.1569 0.4217 36 1 4.4386 -3.9252 -1.1473 37 1 4.0740 -1.6186 -2.1392 38 1 4.6649 -0.8498 -0.5705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168690063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:41 Heat of formation + Delta-G solvation = -33.956392 kcal Electronic energy + Delta-G solvation = -18601.891066 eV Core-core repulsion = 15865.197349 eV Total energy + Delta-G solvation = -2736.693718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30522 -38.15429 -37.43727 -34.79128 -34.27227 -32.53808 -30.13712 -28.06059 -26.78546 -24.92333 -23.60824 -23.14365 -21.69859 -19.37304 -19.00549 -17.86705 -17.09047 -16.85336 -16.27233 -15.72443 -15.70743 -15.07444 -14.74972 -14.69478 -14.48439 -14.03517 -13.82304 -13.60481 -13.34415 -13.06515 -12.87847 -12.59072 -12.42774 -12.35101 -12.15356 -11.94523 -11.75912 -11.54591 -11.35570 -11.08470 -10.75879 -10.49177 -9.47476 -9.32235 -8.27305 -6.28601 1.29148 1.34292 1.44562 1.86385 2.32857 2.34969 2.73433 3.05305 3.47923 3.67727 3.82973 3.94577 4.04577 4.22435 4.33519 4.43966 4.57415 4.70267 4.71310 4.77113 4.83210 4.87552 4.93357 4.96852 5.03016 5.09542 5.10503 5.21908 5.41391 5.51945 5.63533 5.79996 6.28167 6.34494 6.63724 6.72871 6.85628 7.29503 7.56016 8.89809 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.008516 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.562562 B = 3286.955704 C = 3399.236024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.587 5.587 5 C 0.225 3.775 6 C -0.511 4.511 7 H 0.031 0.969 8 C 0.006 3.994 9 N -0.948 5.948 10 Si 0.941 3.059 11 H -0.251 1.251 12 H -0.283 1.283 13 H -0.260 1.260 14 C 0.546 3.454 15 O -0.599 6.599 16 C -0.174 4.174 17 C 0.108 3.892 18 N -0.869 5.869 19 C -0.148 4.148 20 C -0.130 4.130 21 H 0.040 0.960 22 H 0.089 0.911 23 H 0.033 0.967 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.009 0.991 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.352 0.648 34 H 0.343 0.657 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.545 1.772 -18.331 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.317 5.317 5 C 0.103 3.897 6 C -0.550 4.550 7 H 0.050 0.950 8 C -0.191 4.191 9 N -0.589 5.589 10 Si 0.764 3.236 11 H -0.175 1.175 12 H -0.209 1.209 13 H -0.184 1.184 14 C 0.335 3.665 15 O -0.481 6.481 16 C -0.177 4.177 17 C -0.022 4.022 18 N -0.401 5.401 19 C -0.186 4.186 20 C -0.168 4.168 21 H 0.059 0.941 22 H 0.107 0.893 23 H 0.052 0.948 24 H 0.132 0.868 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.374 2.084 -17.173 19.675 hybrid contribution 0.003 -0.568 0.744 0.936 sum 9.377 1.515 -16.429 18.977 Atomic orbital electron populations 1.22102 0.95687 1.01098 1.02156 1.21412 0.94219 0.94335 0.87365 1.22164 1.01574 0.94801 1.03154 1.47967 1.53327 1.22793 1.07595 1.19241 0.94521 0.94229 0.81716 1.21505 1.04762 1.26425 1.02328 0.95042 1.25813 0.96086 0.98524 0.98627 1.70066 1.22606 1.46671 1.19525 0.85814 0.79818 0.79971 0.77990 1.17549 1.20904 1.18401 1.20062 0.76728 0.79634 0.90110 1.90602 1.57120 1.58608 1.41722 1.21449 0.93379 1.08541 0.94343 1.21393 0.92774 0.94891 0.93134 1.58457 1.17558 1.17816 1.46287 1.23067 0.95100 0.97514 1.02878 1.23254 0.96585 0.95601 1.01355 0.94112 0.89253 0.94821 0.86824 0.91707 0.88408 0.93738 0.97346 0.93543 0.92624 0.90346 0.91158 0.83334 0.84417 0.90399 0.85460 0.83953 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 8.31 71.98 0.60 -4.66 16 2 C 0.13 4.05 2.58 44.99 0.12 4.17 16 3 C -0.16 -4.08 9.05 71.98 0.65 -3.43 16 4 N -0.59 -25.02 2.39 -802.16 -1.92 -26.93 16 5 C 0.23 11.56 3.77 85.63 0.32 11.88 16 6 C -0.51 -31.23 8.41 25.60 0.22 -31.01 16 7 H 0.03 2.17 7.83 -2.91 -0.02 2.15 16 8 C 0.01 0.39 5.47 84.65 0.46 0.85 16 9 N -0.95 -62.03 13.96 21.45 0.30 -61.73 16 10 Si 0.94 46.38 27.47 68.60 1.88 48.27 16 11 H -0.25 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 14 C 0.55 23.54 6.64 87.65 0.58 24.12 16 15 O -0.60 -32.62 16.47 -3.05 -0.05 -32.67 16 16 C -0.17 -4.98 0.90 -52.93 -0.05 -5.02 16 17 C 0.11 2.64 6.31 86.31 0.54 3.18 16 18 N -0.87 -25.41 9.40 -186.72 -1.76 -27.17 16 19 C -0.15 -3.47 9.78 30.62 0.30 -3.17 16 20 C -0.13 -2.54 9.26 30.62 0.28 -2.25 16 21 H 0.04 1.72 6.93 -2.39 -0.02 1.70 16 22 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 23 H 0.03 1.30 7.80 -2.38 -0.02 1.28 16 24 H 0.11 2.82 4.27 -2.39 -0.01 2.81 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.34 6.50 -2.39 -0.02 1.32 16 28 H 0.01 0.48 6.54 -2.39 -0.02 0.46 16 29 H 0.05 2.19 5.57 -2.39 -0.01 2.17 16 30 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.08 1.95 5.53 -2.38 -0.01 1.94 16 32 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 33 H 0.35 8.24 9.08 -89.69 -0.81 7.42 16 34 H 0.34 9.85 8.93 -89.69 -0.80 9.05 16 35 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 36 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -82.74 303.26 1.89 -80.85 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.60 Total: 24.72 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.03 Total: -5.34 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.37 Total: -115.83 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.05 Total: -32.67 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -82.74 1.89 -80.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168690063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds