Wall clock time and date at job start Mon Mar 30 2020 03:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.33712 * 118.53775 * 89.99936 * 4 3 2 6 6 O 1.21276 * 118.62304 * 358.31280 * 5 4 3 7 7 C 1.50260 * 122.75046 * 178.28746 * 5 4 3 8 8 H 1.08999 * 109.38600 * 257.16975 * 7 5 4 9 9 C 1.50700 * 109.38377 * 137.37881 * 7 5 4 10 10 H 1.08001 * 120.00305 * 0.02562 * 9 7 5 11 11 C 1.37874 * 119.99714 * 179.97438 * 9 7 5 12 12 N 1.31517 * 120.00108 * 179.97438 * 11 9 7 13 13 Si 1.86804 * 120.00243 * 0.02562 * 11 9 7 14 14 H 1.48499 * 109.47531 * 89.99460 * 13 11 9 15 15 H 1.48501 * 109.47042 * 210.00178 * 13 11 9 16 16 H 1.48501 * 109.46703 * 329.99405 * 13 11 9 17 17 N 1.46902 * 109.97869 * 17.22299 * 7 5 4 18 18 C 1.47192 * 110.17168 * 309.70151 * 17 7 5 19 19 C 1.46010 * 118.53099 * 269.72874 * 4 3 2 20 20 C 1.52997 * 109.37813 * 318.33809 * 19 4 3 21 21 C 1.53002 * 109.37572 * 77.99114 * 19 4 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 0.96997 * 120.00089 * 180.02562 * 12 11 9 30 30 H 1.00898 * 110.99860 * 186.33704 * 17 7 5 31 31 H 1.09002 * 109.58868 * 188.77270 * 18 17 7 32 32 H 1.08994 * 109.59506 * 309.07300 * 18 17 7 33 33 H 1.09004 * 109.47058 * 60.00758 * 20 19 4 34 34 H 1.09008 * 109.46860 * 179.97438 * 20 19 4 35 35 H 1.08994 * 109.47329 * 299.99955 * 20 19 4 36 36 H 1.09001 * 109.46736 * 59.99329 * 21 19 4 37 37 H 1.08993 * 109.47229 * 179.97438 * 21 19 4 38 38 H 1.09000 * 109.46973 * 299.99969 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1433 1.4426 -1.1756 6 8 3.4856 1.4115 -2.1940 7 6 5.6413 1.4803 -1.2868 8 1 5.9589 2.4878 -1.5555 9 6 6.0881 0.5139 -2.3534 10 1 5.3573 -0.0680 -2.8953 11 6 7.4299 0.3735 -2.6380 12 7 7.8199 -0.4703 -3.5684 13 14 8.6939 1.3805 -1.7011 14 1 9.1261 0.6326 -0.4932 15 1 9.8689 1.6347 -2.5729 16 1 8.0914 2.6749 -1.2927 17 7 6.2496 1.1055 -0.0033 18 6 5.6529 1.8904 1.0896 19 6 4.2030 1.4483 1.2819 20 6 3.4986 2.4122 2.2388 21 6 4.1818 0.0393 1.8777 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 8.7639 -0.5693 -3.7684 30 1 7.2511 1.2248 -0.0292 31 1 6.2130 1.7210 2.0093 32 1 5.6795 2.9500 0.8354 33 1 2.4681 2.0891 2.3865 34 1 4.0182 2.4174 3.1970 35 1 3.5074 3.4163 1.8148 36 1 4.6784 -0.6510 1.1958 37 1 4.7028 0.0418 2.8350 38 1 3.1493 -0.2768 2.0264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220392846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:42 Heat of formation + Delta-G solvation = -23.106030 kcal Electronic energy + Delta-G solvation = -18791.771880 eV Core-core repulsion = 16055.548669 eV Total energy + Delta-G solvation = -2736.223211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19073 -36.74270 -35.61129 -33.40743 -32.01352 -31.14857 -28.03717 -27.28671 -26.36626 -23.88323 -22.93655 -21.06868 -21.00268 -17.30919 -16.96716 -16.52726 -16.22578 -14.94171 -14.66408 -14.40488 -13.97590 -13.82228 -13.46421 -13.31900 -12.99616 -12.70060 -12.31756 -12.15906 -12.00283 -11.83389 -11.59741 -11.25904 -11.09347 -10.93677 -10.82582 -10.71696 -10.60554 -10.17187 -9.91086 -9.47224 -8.75752 -8.69845 -8.13041 -7.72167 -6.14396 -4.14901 3.13569 3.15665 3.25319 3.49783 3.62532 4.26342 4.65880 4.87316 5.06845 5.15707 5.21936 5.29594 5.45486 5.49431 5.53805 5.61559 5.65448 5.78407 5.85944 5.86583 5.97966 6.05386 6.06901 6.12689 6.17175 6.23206 6.44776 6.53473 6.62185 6.73470 6.98960 7.27076 7.78851 7.91035 8.15756 8.45638 8.97352 9.08984 9.43061 10.98566 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.009136 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.440845 B = 3064.009138 C = 3630.973365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.107 3.893 4 N -0.605 5.605 5 C 0.540 3.460 6 O -0.543 6.543 7 C 0.171 3.829 8 H 0.029 0.971 9 C -0.484 4.484 10 H 0.089 0.911 11 C 0.079 3.921 12 N -0.888 5.888 13 Si 0.872 3.128 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.673 5.673 18 C 0.039 3.961 19 C 0.176 3.824 20 C -0.158 4.158 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.267 0.733 30 H 0.327 0.673 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 4.787 13.948 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.016 4.016 4 N -0.339 5.339 5 C 0.329 3.671 6 O -0.419 6.419 7 C 0.062 3.938 8 H 0.046 0.954 9 C -0.523 4.523 10 H 0.107 0.893 11 C -0.124 4.124 12 N -0.525 5.525 13 Si 0.701 3.299 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.199 1.199 17 N -0.312 5.312 18 C -0.092 4.092 19 C 0.090 3.910 20 C -0.216 4.216 21 C -0.211 4.211 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.573 4.157 13.354 16.404 hybrid contribution 1.290 1.288 0.442 1.876 sum -7.283 5.446 13.795 16.523 Atomic orbital electron populations 1.21689 0.95889 1.01441 1.01397 1.22016 0.95311 0.97845 1.03017 1.21480 0.80884 0.96838 1.02361 1.47673 1.05808 1.74676 1.05735 1.20493 0.90926 0.73717 0.81941 1.90591 1.66966 1.49556 1.34753 1.19713 0.87484 0.97769 0.88867 0.95368 1.20691 0.93563 1.22863 1.15187 0.89299 1.24915 0.97959 0.94912 0.94629 1.69853 1.16220 1.35402 1.31056 0.87063 0.81920 0.80614 0.80322 1.19427 1.21341 1.19869 1.61731 1.08223 1.57099 1.04108 1.22301 0.94268 0.95585 0.97000 1.20233 0.91529 0.95791 0.83460 1.22209 1.00952 0.99289 0.99151 1.22258 1.01429 0.96691 1.00748 0.92846 0.92698 0.93158 0.91634 0.91225 0.90366 0.91018 0.92301 0.84973 0.90129 0.95195 0.91701 0.91402 0.92311 0.90389 0.92498 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.14 -2.12 6.04 -26.73 -0.16 -2.28 16 3 C 0.11 1.67 4.95 -4.04 -0.02 1.65 16 4 N -0.60 -11.12 2.37 -159.76 -0.38 -11.50 16 5 C 0.54 12.72 7.10 -11.67 -0.08 12.64 16 6 O -0.54 -14.45 15.52 5.56 0.09 -14.36 16 7 C 0.17 4.25 2.15 -70.23 -0.15 4.10 16 8 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 9 C -0.48 -14.21 9.07 -34.44 -0.31 -14.52 16 10 H 0.09 2.95 7.64 -52.49 -0.40 2.55 16 11 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 13 Si 0.87 20.75 24.57 -169.99 -4.18 16.57 16 14 H -0.27 -6.04 7.02 56.52 0.40 -5.64 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 17 N -0.67 -14.53 6.05 -109.31 -0.66 -15.19 16 18 C 0.04 0.65 5.26 -3.77 -0.02 0.63 16 19 C 0.18 2.68 0.91 -132.19 -0.12 2.56 16 20 C -0.16 -1.79 7.87 37.16 0.29 -1.49 16 21 C -0.15 -2.20 8.21 37.16 0.30 -1.90 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.91 5.51 -51.93 -0.29 0.63 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.34 7.26 -51.93 -0.38 0.97 16 28 H 0.07 0.89 5.51 -51.93 -0.29 0.61 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.33 7.12 4.12 -39.29 -0.16 6.96 16 31 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 32 H 0.03 0.49 8.05 -51.93 -0.42 0.08 16 33 H 0.06 0.66 6.30 -51.93 -0.33 0.33 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.70 5.70 -51.93 -0.30 0.40 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -32.46 288.69 -5.89 -38.36 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.89 Total: 5.92 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 0.00 Total: 2.24 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.27 Total: -53.08 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.18 Total: 16.57 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.46 -5.89 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220392846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.252 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds